Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4799

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4799: 13167 - K05676 ABCD2, ALDL1 ATP-binding cassette, subfamily D (ALD), member 2, at 1038794 to 1042061 13167 mRNA_4800: 13168 - HMMPfam-Glycosyl transferases group 1-PF00534,SUPERFAMILY--SSF53756, at 1042845 to 1046169 13168

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,038,000 - 2.0
1,038,277 - -0.1
1,038,432 - -1.0
1,038,620 - -0.1
1,038,621 + 0.5
1,038,621 + -0.3
1,039,009 - -0.9
1,039,051 + 0.8
1,039,322 + 13167 mRNA_4799 0.16 -0.5
1,039,600 + 13167 mRNA_4799 0.25 -0.4
1,039,733 + 13167 mRNA_4799 0.29 0.3
1,039,885 - 13167 mRNA_4799 0.33 2.5
1,040,483 + 13167 mRNA_4799 0.52 1.4
1,040,627 + 13167 mRNA_4799 0.56 0.4
1,040,631 - 13167 mRNA_4799 0.56 0.6
1,040,648 + 13167 mRNA_4799 0.57 -0.1
1,041,149 - 13167 mRNA_4799 0.72 1.5
1,041,362 + 13167 mRNA_4799 0.79 0.3
1,041,497 - 13167 mRNA_4799 0.83 -0.6
1,041,612 - 13167 mRNA_4799 0.86 2.1
1,041,616 - 13167 mRNA_4799 0.86 1.8
1,041,628 - 13167 mRNA_4799 0.87 0.5
1,041,634 + 13167 mRNA_4799 0.87 -1.6
1,041,744 + 0.6
1,041,755 + 0.8
1,041,798 - -0.3
1,041,908 - -0.3
1,041,924 - 0.1
1,042,044 - -1.3
1,042,051 - -0.7
1,042,055 + 0.5
1,042,063 - 2.1
1,042,066 - 0.3
1,042,067 + -0.5
1,042,070 + 0.2
1,042,209 - 0.6
1,042,216 + 1.7
1,042,358 + 0.2
1,042,626 - 0.2
1,042,627 - -0.1
1,042,634 + 0.2
1,042,652 - 3.6
1,042,659 + -1.6
1,042,662 + 1.0
1,042,797 - 1.9