Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4753

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4752: 13120 - KOG1263 Multicopper oxidases, at 922993 to 927297 13120 mRNA_4753: 13121 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 927583 to 931061 13121 mRNA_4754: 13122 - ProSiteProfiles-F-box domain profile.-PS50181, at 931606 to 933249 13122

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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926,672 - 13120 mRNA_4752 0.85 1.3
926,822 + 13120 mRNA_4752 0.89 -0.0
926,841 + 13120 mRNA_4752 0.89 0.5
926,930 - 0.2
926,936 - 0.2
927,146 + 0.5
927,225 - -0.8
927,384 - -0.0
927,687 + 0.3
928,093 + 13121 mRNA_4753 0.15 1.2
928,145 - 13121 mRNA_4753 0.16 -1.6
928,208 - 13121 mRNA_4753 0.18 0.9
928,215 + 13121 mRNA_4753 0.18 1.9
928,365 - 13121 mRNA_4753 0.22 0.2
928,367 + 13121 mRNA_4753 0.23 -0.2
928,725 + 13121 mRNA_4753 0.33 -0.4
928,810 - 13121 mRNA_4753 0.35 -0.3
928,834 - 13121 mRNA_4753 0.36 0.0
928,937 - 13121 mRNA_4753 0.39 1.1
928,963 - 13121 mRNA_4753 0.40 0.3
929,143 + 13121 mRNA_4753 0.45 -0.7
929,262 - 13121 mRNA_4753 0.48 1.2
929,577 - 13121 mRNA_4753 0.57 -0.3
929,821 - 13121 mRNA_4753 0.64 0.3
929,827 + 13121 mRNA_4753 0.65 0.2
929,830 - 13121 mRNA_4753 0.65 -0.9
929,841 + 13121 mRNA_4753 0.65 -0.9
929,850 - 13121 mRNA_4753 0.65 1.4
929,884 + 13121 mRNA_4753 0.66 0.7
930,106 - 13121 mRNA_4753 0.73 -0.1
930,118 - 13121 mRNA_4753 0.73 1.0
930,118 + 13121 mRNA_4753 0.73 1.1
930,303 + 13121 mRNA_4753 0.78 -0.3
930,308 - 13121 mRNA_4753 0.78 -1.0
930,429 - 13121 mRNA_4753 0.82 -0.0
930,441 - 13121 mRNA_4753 0.82 -0.5
930,493 - 13121 mRNA_4753 0.84 2.2
930,568 - 13121 mRNA_4753 0.86 0.8
930,593 + 13121 mRNA_4753 0.87 1.5
930,908 + 1.3
931,011 - -0.7
931,024 + -0.9
931,031 - -0.9
931,036 - 0.7
931,051 + 0.5
931,202 + 0.7
931,204 - -0.7
931,211 + 0.7
931,214 - -0.2
931,336 + 0.0
931,336 + 0.5
931,342 - 2.0
931,343 - 0.1
931,347 + -0.3
931,357 - 0.7
931,359 - -2.1
931,360 - 1.3
931,360 + 0.5
931,361 - 0.1
931,367 - 0.3
931,376 + 0.3
931,376 + 1.0
931,379 + 0.5
931,386 - 0.4
931,413 + 2.2
931,508 - 1.7
931,524 + -0.1
931,540 - 1.5
931,680 - 0.1
931,801 - 13122 mRNA_4754 0.12 1.2
931,806 - 13122 mRNA_4754 0.12 0.1
931,813 + 13122 mRNA_4754 0.13 0.3
931,881 - 13122 mRNA_4754 0.17 1.3
931,955 - 13122 mRNA_4754 0.21 0.5
931,989 + 13122 mRNA_4754 0.23 -1.2
931,990 - 13122 mRNA_4754 0.23 0.8
932,016 + 13122 mRNA_4754 0.25 3.4