Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4738

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4737: 13105 - K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3, at 889765 to 891262 13105 mRNA_4738: 13106 - K01738 cysK cysteine synthase A, at 891331 to 893508 13106 mRNA_4739: 13107 - K06883 K06883 uncharacterized protein, at 893968 to 895440 13107

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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890,357 - 13105 mRNA_4737 0.40 2.0
890,467 + 13105 mRNA_4737 0.47 0.0
890,483 + 13105 mRNA_4737 0.48 0.3
890,494 + 13105 mRNA_4737 0.49 -0.1
890,754 - 13105 mRNA_4737 0.66 0.0
890,755 - 13105 mRNA_4737 0.66 0.0
890,762 + 13105 mRNA_4737 0.67 2.5
890,921 - 13105 mRNA_4737 0.77 0.9
891,485 - -0.1
891,512 - 1.2
891,513 + 0.4
891,513 + 1.5
891,682 - 13106 mRNA_4738 0.16 0.4
891,683 + 13106 mRNA_4738 0.16 -1.1
891,698 + 13106 mRNA_4738 0.17 -0.2
891,775 + 13106 mRNA_4738 0.20 -0.2
891,792 + 13106 mRNA_4738 0.21 0.1
891,826 + 13106 mRNA_4738 0.23 1.0
892,050 - 13106 mRNA_4738 0.33 0.5
892,060 - 13106 mRNA_4738 0.33 -1.8
892,074 - 13106 mRNA_4738 0.34 -0.1
892,090 + 13106 mRNA_4738 0.35 0.1
892,202 - 13106 mRNA_4738 0.40 0.1
892,276 - 13106 mRNA_4738 0.43 1.3
892,341 + 13106 mRNA_4738 0.46 1.2
892,421 - 13106 mRNA_4738 0.50 2.3
892,480 - 13106 mRNA_4738 0.53 -0.5
892,620 - 13106 mRNA_4738 0.59 -0.0
892,839 + 13106 mRNA_4738 0.69 -0.1
892,994 + 13106 mRNA_4738 0.76 -0.4
893,065 + 13106 mRNA_4738 0.80 1.2
893,547 - -1.0
893,814 + 0.2
893,838 - -0.1
893,843 - -0.5
893,856 + -0.4
893,857 + -0.2
893,867 - 2.6
893,987 - 1.1