Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4728

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4727: 13095 - Hypothetical Protein, at 868153 to 868831 13095 mRNA_4728: 13096 - HMMPfam-CUE domain-PF02845,HMMPfam-2OG-Fe(II) oxygenase superfamily-PF13532,ProSiteProfiles-CUE domain profile.-PS51140,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 868902 to 870638 13096 mRNA_4729: 13097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 870839 to 873938 13097

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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867,923 - 0.3
868,012 - 0.0
868,303 + 13095 mRNA_4727 0.22 -0.9
868,448 + 13095 mRNA_4727 0.43 -0.1
868,595 + 13095 mRNA_4727 0.65 -0.1
868,598 + 13095 mRNA_4727 0.66 0.7
868,608 - 13095 mRNA_4727 0.67 -0.3
868,615 - 13095 mRNA_4727 0.68 -0.2
868,719 - 13095 mRNA_4727 0.83 1.7
868,727 - 13095 mRNA_4727 0.85 0.9
868,799 + 0.1
868,864 - 1.4
868,873 - 0.1
868,885 + 0.2
869,138 - 13096 mRNA_4728 0.14 1.5
869,611 - 13096 mRNA_4728 0.41 -0.7
869,768 - 13096 mRNA_4728 0.50 0.3
870,449 - 13096 mRNA_4728 0.89 1.2
870,474 + 0.4
870,592 + -0.2
870,761 - -0.4
870,763 + 0.2
870,777 + 0.7
871,038 - -0.4
871,083 - -0.5
871,092 + -1.1
871,152 - 13097 mRNA_4729 0.10 -0.4
871,208 - 13097 mRNA_4729 0.12 2.0
871,535 - 13097 mRNA_4729 0.22 0.8