Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4718

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4717: 13085 - BLAST putative proteasome regulatory subunit 12 [Rhizoctoni..., at 844086 to 846101 13085 mRNA_4718: 13086 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 846943 to 849026 13086 mRNA_4719: 13087 - K18693 DPP1 diacylglycerol diphosphate phosphatase / phosphatidate phosphatase, at 849310 to 850936 13087

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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846,034 + 1.2
846,037 - 1.3
846,048 + -0.2
846,250 - 0.3
846,365 - -0.2
846,479 - 1.3
846,495 + 0.6
846,513 + -1.0
846,598 - 0.1
846,617 + 3.8
846,627 - 0.2
846,630 - -0.5
846,645 + 0.0
846,649 + -1.0
846,660 + -0.2
846,782 - -0.4
846,785 - 1.7
846,794 - 1.4
846,812 - -1.8
846,919 - 1.0
847,070 - 0.6
847,094 - 1.9
847,485 + 13086 mRNA_4718 0.26 -0.4
847,488 - 13086 mRNA_4718 0.26 1.8
847,497 + 13086 mRNA_4718 0.27 -0.6
847,916 - 13086 mRNA_4718 0.47 0.9
848,048 + 13086 mRNA_4718 0.53 -0.2
848,155 - 13086 mRNA_4718 0.58 -0.1
848,239 + 13086 mRNA_4718 0.62 2.7
848,387 + 13086 mRNA_4718 0.69 1.2
848,394 - 13086 mRNA_4718 0.70 0.9
848,397 - 13086 mRNA_4718 0.70 -0.2
848,954 - -0.0
848,954 - -1.4
849,097 - 0.0
849,256 - 0.8
849,260 + -0.3
849,275 + 0.4
849,279 - -0.2
849,280 - 0.9
849,367 + 1.4
849,381 + 0.3
849,401 - 1.0
849,404 - 1.9
849,431 - 1.6
849,434 + -0.5
849,570 - 13087 mRNA_4719 0.16 -0.3
849,598 + 13087 mRNA_4719 0.18 0.4
849,621 + 13087 mRNA_4719 0.19 -0.4
849,702 - 13087 mRNA_4719 0.24 0.2
849,743 - 13087 mRNA_4719 0.27 2.7
849,802 + 13087 mRNA_4719 0.30 0.0
849,822 - 13087 mRNA_4719 0.31 -1.1
849,826 + 13087 mRNA_4719 0.32 0.6
850,012 + 13087 mRNA_4719 0.43 -1.5