Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4717

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4717: 13085 - BLAST putative proteasome regulatory subunit 12 [Rhizoctoni..., at 844086 to 846101 13085 mRNA_4718: 13086 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 846943 to 849026 13086

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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843,134 - 0.3
843,245 + -1.3
843,258 + 0.6
843,374 - -0.1
843,400 + -0.5
843,408 + 0.9
843,413 + 2.4
843,553 - -0.1
843,572 + 0.5
843,584 - -0.6
843,676 - 2.1
843,708 + 0.1
843,979 + 1.4
844,109 - 0.1
844,159 + 0.8
844,300 + 13085 mRNA_4717 0.11 -0.1
844,403 - 13085 mRNA_4717 0.16 0.3
844,428 + 13085 mRNA_4717 0.17 1.3
844,477 + 13085 mRNA_4717 0.19 -0.8
844,608 + 13085 mRNA_4717 0.26 0.4
845,186 - 13085 mRNA_4717 0.55 -0.3
845,460 - 13085 mRNA_4717 0.68 1.4
845,470 - 13085 mRNA_4717 0.69 1.0
845,653 + 13085 mRNA_4717 0.78 1.8
845,756 + 13085 mRNA_4717 0.83 -0.1
845,760 - 13085 mRNA_4717 0.83 0.8
845,781 + 13085 mRNA_4717 0.84 -0.4
845,888 + 13085 mRNA_4717 0.89 1.6
846,034 + 1.2
846,037 - 1.3
846,048 + -0.2
846,250 - 0.3
846,365 - -0.2
846,479 - 1.3
846,495 + 0.6
846,513 + -1.0
846,598 - 0.1
846,617 + 3.8
846,627 - 0.2
846,630 - -0.5
846,645 + 0.0
846,649 + -1.0
846,660 + -0.2
846,782 - -0.4
846,785 - 1.7
846,794 - 1.4
846,812 - -1.8
846,919 - 1.0
847,070 - 0.6
847,094 - 1.9