Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4700

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4699: 13067 - K09140 TSR3 pre-rRNA-processing protein TSR3, at 801271 to 802584 13067 mRNA_4700: 13068 - BLAST putative mannoprotein [Rhizoctonia solani 123E], at 802870 to 804709 13068 mRNA_4701: 13069 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 805189 to 806290 13069

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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801,871 + 13067 mRNA_4699 0.46 0.5
801,875 + 13067 mRNA_4699 0.46 -1.5
802,459 - -1.0
802,666 - -0.1
802,788 - 1.6
802,796 + 0.7
803,040 - -0.1
803,210 + 13068 mRNA_4700 0.18 1.1
803,361 - 13068 mRNA_4700 0.27 -0.2
803,368 - 13068 mRNA_4700 0.27 0.6
803,641 - 13068 mRNA_4700 0.42 0.4
803,777 - 13068 mRNA_4700 0.49 2.2
804,357 - 13068 mRNA_4700 0.81 -0.1
804,361 + 13068 mRNA_4700 0.81 0.6
804,381 - 13068 mRNA_4700 0.82 -2.0
804,510 + 13068 mRNA_4700 0.89 0.2
804,518 - 13068 mRNA_4700 0.90 0.5
804,525 + 13068 mRNA_4700 0.90 0.5
804,634 - 0.7
804,660 - 0.1
804,672 + 0.1
804,678 - 0.1
804,791 - 0.4
804,804 - -0.5
804,816 - -0.5
804,821 + -0.2
804,821 + -0.3
804,822 - 0.0
804,826 + -3.2
804,831 + 1.3
804,839 + 1.0
804,841 - 0.1
804,847 + 1.5
804,850 - 1.2
804,858 + -0.8
804,863 + 0.5
804,878 - 0.6
804,888 - 0.3
804,895 + 0.2
805,036 - 0.9
805,045 - 0.6
805,045 + -0.4
805,054 + 0.9
805,064 + -0.4
805,068 - 0.0
805,071 + 0.4
805,084 + -1.1
805,086 + -1.5
805,088 - -0.4
805,110 + 0.1
805,142 - -0.0
805,161 - 0.5
805,181 - -0.8
805,225 + 0.3
805,242 - 2.6
805,257 + 0.5
805,267 - -0.4
805,274 + 1.2
805,276 - -0.9
805,278 - 0.7
805,284 + 0.1
805,289 + 2.2
805,293 + 1.9
805,295 - 0.2
805,413 - 13069 mRNA_4701 0.20 0.1
805,440 - 13069 mRNA_4701 0.23 -0.9