Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4609

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4608: 12976 - KOG0254 Predicted transporter (major facilitator superfamily), at 572565 to 575380 12976 mRNA_4609: 12977 - K00008 SORD, gutB L-iditol 2-dehydrogenase, at 575731 to 577281 12977

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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574,840 - 12976 mRNA_4608 0.81 1.7
575,011 + 12976 mRNA_4608 0.87 0.8
575,174 - 0.8
575,193 + -0.7
575,483 - -0.2
575,504 - 0.4
575,510 - 0.0
575,511 + 0.2
575,516 - 2.1
575,519 - 1.4
575,520 - -1.3
575,521 + -0.5
575,538 - 1.0
575,553 - 0.3
575,559 + 0.1
575,562 - 0.2
575,611 - 0.1
575,613 + 0.2
575,616 + 0.3
575,617 - 0.0
575,629 + 0.4
575,636 - -1.5
575,640 - 0.5
575,643 + 0.4
575,643 + -0.5
575,646 - 0.4
575,651 + 0.7
575,656 + -0.2
575,657 + 1.4
575,666 + -0.0
575,687 - 0.2
575,689 + -0.5
575,753 - -0.2
575,908 + 12977 mRNA_4609 0.11 0.2
575,912 + 12977 mRNA_4609 0.12 -1.0
575,915 - 12977 mRNA_4609 0.12 1.5
575,922 - 12977 mRNA_4609 0.12 0.5
575,941 - 12977 mRNA_4609 0.14 1.8
575,948 + 12977 mRNA_4609 0.14 -0.1
576,952 - 12977 mRNA_4609 0.79 -1.2
576,963 + 12977 mRNA_4609 0.79 -0.8
577,511 - 1.5
577,693 - 0.0
577,696 + -0.4
578,122 - 1.0
578,248 - -0.5
578,260 + 1.1
578,264 + -0.0
578,270 + 1.2
578,272 + 0.1
578,277 + -1.4
578,280 - 1.0