Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4600

Experiments: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4599: 12967 - K12820 DHX15, PRP43 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43, at 554983 to 558487 12967 mRNA_4600: 12968 - K08343 ATG3 ubiquitin-like-conjugating enzyme ATG3, at 558585 to 560759 12968 mRNA_4601: 12969 - HMMPfam-Sen15 protein-PF09631,SUPERFAMILY--SSF53032, at 560875 to 561580 12969

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
558,354 - 3.1
558,358 - 0.2
558,499 - -0.5
558,523 + 1.0
558,533 - -1.8
558,795 - -1.5
558,832 + 12968 mRNA_4600 0.11 -1.3
559,087 - 12968 mRNA_4600 0.23 -0.8
559,390 - 12968 mRNA_4600 0.37 -2.0
559,409 - 12968 mRNA_4600 0.38 -1.1
559,571 + 12968 mRNA_4600 0.45 -0.3
559,814 - 12968 mRNA_4600 0.57 -0.3
559,819 + 12968 mRNA_4600 0.57 0.0
559,905 - 12968 mRNA_4600 0.61 -2.2
560,080 - 12968 mRNA_4600 0.69 -1.8
560,223 - 12968 mRNA_4600 0.75 -2.4
560,541 + 12968 mRNA_4600 0.90 -1.0
560,661 + -1.3
560,690 - -0.6
560,846 - -0.8
560,849 + -0.1
560,860 + -0.5
561,582 - 2.2
561,633 - -0.3
561,698 - 0.2
561,705 + -0.0
561,711 + 2.0
561,734 - 1.7