Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4569

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4568: 12936 - Hypothetical Protein, at 485805 to 489325 12936 mRNA_4569: 12937 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 489481 to 490955 12937 mRNA_4570: 12938 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 491173 to 492372 12938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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488,525 + 12936 mRNA_4568 0.77 1.0
488,662 + 12936 mRNA_4568 0.81 1.1
488,954 - 12936 mRNA_4568 0.89 1.4
489,115 + 1.4
489,246 - -0.5
489,812 + 12937 mRNA_4569 0.22 1.1
490,963 - 1.3
490,972 + -0.4
490,976 + 0.3
490,980 + 1.1
490,983 - -0.6
490,990 + 1.0
491,029 + -0.0
491,030 - 1.1
491,040 + 0.2
491,041 - 1.2
491,133 - 0.3
491,145 + 1.9
491,150 - -1.4
491,181 + -1.4
491,193 + 0.0
491,199 - 0.5
491,280 + 0.5
491,314 + 12938 mRNA_4570 0.12 0.2
491,318 - 12938 mRNA_4570 0.12 0.2
491,442 - 12938 mRNA_4570 0.22 -1.8
491,453 - 12938 mRNA_4570 0.23 -0.6
491,542 - 12938 mRNA_4570 0.31 -1.6
491,568 - 12938 mRNA_4570 0.33 -1.1
491,807 - 12938 mRNA_4570 0.53 -0.8
491,824 + 12938 mRNA_4570 0.54 2.3