Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4541

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4540: 12908 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 412485 to 416287 12908 mRNA_4541: 12909 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 417161 to 419747 12909

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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416,246 - -0.1
416,272 - -1.3
416,273 + 0.3
416,284 + 0.7
416,394 - 0.5
416,420 + -0.4
416,428 + -0.1
416,548 - 2.3
416,572 - 0.2
416,733 - 0.2
416,756 - -0.1
416,859 - 1.0
416,868 - 0.0
416,877 + 0.2
416,910 - 0.1
416,914 - 0.3
416,915 + 0.3
416,916 + 0.4
417,561 - 12909 mRNA_4541 0.15 -1.0
417,618 + 12909 mRNA_4541 0.18 0.6
417,795 - 12909 mRNA_4541 0.25 -0.9
418,091 + 12909 mRNA_4541 0.36 0.5
418,356 - 12909 mRNA_4541 0.46 -0.3
418,515 + 12909 mRNA_4541 0.52 0.2
418,655 + 12909 mRNA_4541 0.58 -0.5
418,931 - 12909 mRNA_4541 0.68 0.4
420,106 + -0.4
420,146 + 1.6
420,262 - 0.2
420,263 + -0.3
420,263 - 0.3
420,263 + -0.7
420,277 - 1.3
420,299 + 1.4
420,377 + -0.0