Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4499

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4498: 12866 - Hypothetical Protein, at 322589 to 323741 12866 mRNA_4499: 12867 - K01968 E6.4.1.4A 3-methylcrotonyl-CoA carboxylase alpha subunit, at 323884 to 327513 12867 mRNA_4500: 12868 - K14304 NUP85 nuclear pore complex protein Nup85, at 327724 to 330564 12868

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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323,270 + 12866 mRNA_4498 0.59 1.3
323,316 - 12866 mRNA_4498 0.63 1.7
323,421 + 12866 mRNA_4498 0.72 -0.2
323,656 + 0.5
324,329 - 12867 mRNA_4499 0.12 0.6
324,333 - 12867 mRNA_4499 0.12 2.3
324,393 - 12867 mRNA_4499 0.14 0.2
324,557 - 12867 mRNA_4499 0.19 0.3
324,563 + 12867 mRNA_4499 0.19 1.4
325,142 + 12867 mRNA_4499 0.35 0.2
325,544 + 12867 mRNA_4499 0.46 3.5
325,589 - 12867 mRNA_4499 0.47 1.2
325,687 - 12867 mRNA_4499 0.50 -0.5
325,838 + 12867 mRNA_4499 0.54 0.3
326,560 + 12867 mRNA_4499 0.74 0.2
326,561 - 12867 mRNA_4499 0.74 -1.8
327,285 - -0.8
327,422 + 0.3
327,434 - 0.3
327,437 + 0.4
327,447 + -0.1
327,674 + -1.2
327,798 - -0.6
328,363 - 12868 mRNA_4500 0.22 0.1
328,485 - 12868 mRNA_4500 0.27 -0.8