Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4485

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4484: 12852 - KOG2588 Predicted DNA-binding protein, at 289880 to 293833 12852 mRNA_4485: 12853 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 294056 to 296303 12853 mRNA_4486: 12854 - K01293 E3.4.17.4 Gly-Xaa carboxypeptidase, at 296577 to 298255 12854

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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293,091 - 12852 mRNA_4484 0.81 -1.3
293,557 + 1.6
293,584 + -0.7
293,627 + 0.0
293,743 + 1.7
293,855 - -0.2
293,910 - 0.4
293,911 - 0.0
293,919 - 2.0
293,921 - 2.2
293,926 - -0.6
293,929 + 1.8
293,931 - 1.7
293,934 + -0.4
293,943 - -0.6
293,970 + -0.1
293,975 + 2.1
293,996 + 2.1
294,080 + -0.2
294,084 + -0.8
294,256 - 2.3
294,357 - 12853 mRNA_4485 0.13 0.3
294,608 - 12853 mRNA_4485 0.25 0.7
294,658 - 12853 mRNA_4485 0.27 1.3
294,810 - 12853 mRNA_4485 0.34 1.3
295,541 + 12853 mRNA_4485 0.66 0.8
295,672 + 12853 mRNA_4485 0.72 -0.5
295,951 - 12853 mRNA_4485 0.84 0.1
295,984 - 12853 mRNA_4485 0.86 1.8
296,134 + 0.5
296,231 - 1.4
296,259 - -0.0
296,265 - 1.6
296,268 - -1.1
296,268 + -0.1
296,269 - -1.3
296,283 + -1.8
296,289 + -0.7
296,330 + 1.4
296,336 - 1.4
296,438 + 0.2
296,614 - -0.1
296,850 - 12854 mRNA_4486 0.16 0.3
296,859 + 12854 mRNA_4486 0.17 1.2
296,988 + 12854 mRNA_4486 0.24 2.5
297,188 + 12854 mRNA_4486 0.36 1.7
297,300 - 12854 mRNA_4486 0.43 -0.0