Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4478

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4477: 12845 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 276130 to 277462 12845 mRNA_4478: 12846 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 277974 to 281759 12846 mRNA_4479: 12847 - K17290 HTATIP2 oxidoreductase, at 282366 to 283335 12847

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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277,455 + -0.8
277,503 - -0.9
277,589 - -2.7
277,621 - 0.0
277,633 - -0.5
277,636 - 0.3
277,643 - -0.6
277,700 + 0.3
277,702 + -0.1
277,702 + 0.3
277,957 - -0.1
278,259 + -0.9
278,836 - 12846 mRNA_4478 0.23 -2.2
278,980 + 12846 mRNA_4478 0.27 0.3
278,998 + 12846 mRNA_4478 0.27 1.4
279,134 + 12846 mRNA_4478 0.31 -1.1
279,266 - 12846 mRNA_4478 0.34 -0.7
279,284 - 12846 mRNA_4478 0.35 -1.1
279,526 - 12846 mRNA_4478 0.41 -0.2
279,564 - 12846 mRNA_4478 0.42 0.7
279,981 + 12846 mRNA_4478 0.53 0.2
280,149 - 12846 mRNA_4478 0.57 -1.2
280,149 + 12846 mRNA_4478 0.57 -0.7
280,184 - 12846 mRNA_4478 0.58 0.8
280,457 - 12846 mRNA_4478 0.66 1.7
280,476 + 12846 mRNA_4478 0.66 1.4
280,737 + 12846 mRNA_4478 0.73 3.4
281,212 - 12846 mRNA_4478 0.86 -2.4
281,438 + -0.1
281,474 + -0.1
281,622 + -1.3
282,041 - -0.3
282,043 + 0.8
282,048 + 0.3
282,048 - 0.2
282,049 + 1.0
282,065 - 2.1
282,099 - 0.8
282,108 + 1.4
282,111 - -0.4
282,113 - 1.9
282,115 - 3.0
282,124 - 0.2
282,142 + -2.1
282,144 + 0.8
282,172 + 1.6
282,253 + -0.3
282,351 + 1.1
282,406 - 1.3
282,413 - 0.3