Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4459

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4458: 12826 - K08762 DBI, ACBP diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein), at 233111 to 233901 12826 mRNA_4459: 12827 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 234229 to 236969 12827 mRNA_4460: 12828 - SUPERFAMILY--SSF52047, at 237623 to 238720 12828

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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233,981 + -0.0
234,123 - 1.9
234,425 + -0.9
234,439 + -0.5
234,460 - -0.8
234,842 + 12827 mRNA_4459 0.22 0.3
234,898 - 12827 mRNA_4459 0.24 0.3
235,600 + 12827 mRNA_4459 0.50 0.4
236,084 + 12827 mRNA_4459 0.68 -0.5
236,205 + 12827 mRNA_4459 0.72 0.2
236,248 - 12827 mRNA_4459 0.74 -0.3
236,285 - 12827 mRNA_4459 0.75 -0.9
236,343 - 12827 mRNA_4459 0.77 0.1
236,488 - 12827 mRNA_4459 0.82 -0.9
236,509 + 12827 mRNA_4459 0.83 0.8
236,529 + 12827 mRNA_4459 0.84 -0.8
236,530 - 12827 mRNA_4459 0.84 -0.6
236,644 - 12827 mRNA_4459 0.88 -1.5
236,646 + 12827 mRNA_4459 0.88 -1.6
236,679 - 12827 mRNA_4459 0.89 -0.4
236,682 - 12827 mRNA_4459 0.89 0.8
236,762 + -1.0
236,797 + 0.3
236,799 + 0.3
236,892 - 2.1
236,929 + -0.5
236,933 - -1.3
236,939 - 1.0
236,971 - 0.4
237,027 - 0.6
237,040 + -0.8
237,114 + 0.8
237,236 - 0.2
237,353 - 2.4
237,394 - 0.3
237,406 + 0.2
237,426 + 0.8
237,562 + 0.9
237,582 + -0.4
237,585 - 0.3
237,629 + -0.4
237,800 + 12828 mRNA_4460 0.16 -0.6