Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4435

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4434: 12802 - Hypothetical Protein, at 173959 to 175087 12802 mRNA_4435: 12803 - KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains, at 175416 to 177921 12803 mRNA_4436: 12804 - Hypothetical Protein, at 178306 to 178939 12804

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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174,703 + 12802 mRNA_4434 0.66 0.9
174,773 - 12802 mRNA_4434 0.72 1.2
174,907 - 12802 mRNA_4434 0.84 0.0
174,915 + 12802 mRNA_4434 0.85 -0.6
174,941 - 12802 mRNA_4434 0.87 -0.4
174,947 + 12802 mRNA_4434 0.88 0.6
175,090 + 0.7
175,090 - 0.8
175,218 + -0.4
175,223 + 1.1
175,390 + 0.7
175,485 + 0.6
175,544 - -0.3
175,554 + -0.4
175,667 - 12803 mRNA_4435 0.10 1.4
175,815 + 12803 mRNA_4435 0.16 1.0
175,945 + 12803 mRNA_4435 0.21 -0.5
176,517 + 12803 mRNA_4435 0.44 0.7
176,528 + 12803 mRNA_4435 0.44 0.1
176,801 - 12803 mRNA_4435 0.55 -0.3
176,934 - 12803 mRNA_4435 0.61 0.5
177,166 + 12803 mRNA_4435 0.70 -0.2
177,346 - 12803 mRNA_4435 0.77 -0.6
177,376 - 12803 mRNA_4435 0.78 -0.2
177,421 - 12803 mRNA_4435 0.80 0.4
177,436 + 12803 mRNA_4435 0.81 0.6
177,454 + 12803 mRNA_4435 0.81 -0.1
177,684 - 2.0
177,735 + 0.8
177,743 + 0.2
178,129 + 1.6
178,180 - 0.1
178,275 + 0.5
178,278 - -0.4
178,309 - 1.2
178,315 - 0.4
178,320 - 2.0
178,320 - -0.4
178,322 + -1.0
178,324 + -0.2
178,335 + -0.4
178,341 + 1.3
178,347 + 1.6
178,358 - 0.8
178,381 - 12804 mRNA_4436 0.12 0.8
178,385 - 12804 mRNA_4436 0.12 -0.8
178,488 + 12804 mRNA_4436 0.29 1.1
178,622 - 12804 mRNA_4436 0.50 0.2
178,627 + 12804 mRNA_4436 0.51 -0.1
178,736 + 12804 mRNA_4436 0.68 0.9
178,820 + 12804 mRNA_4436 0.81 0.5
178,867 + 12804 mRNA_4436 0.88 1.5
178,884 + -0.8
178,885 - 0.6