Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4426

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4425: 12793 - KOG3844 Predicted component of NuA3 histone acetyltransferase complex, at 153897 to 156025 12793 mRNA_4426: 12794 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 156367 to 159071 12794 mRNA_4427: 12795 - K11539 CBR4 carbonyl reductase 4, at 160068 to 161346 12795

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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155,449 - 12793 mRNA_4425 0.73 0.4
155,455 - 12793 mRNA_4425 0.73 -0.1
155,497 - 12793 mRNA_4425 0.75 0.8
155,640 + 12793 mRNA_4425 0.82 0.9
155,659 - 12793 mRNA_4425 0.83 1.0
155,675 - 12793 mRNA_4425 0.84 1.6
155,710 - 12793 mRNA_4425 0.85 -0.3
155,760 + 12793 mRNA_4425 0.88 2.3
155,762 - 12793 mRNA_4425 0.88 1.6
155,773 - 12793 mRNA_4425 0.88 2.2
155,922 - -0.5
156,072 + -0.1
156,078 + 0.1
156,081 - 1.3
156,099 + -0.3
156,125 - -0.3
156,139 + -1.3
156,213 - 0.8
156,339 - 0.9
156,515 - 1.8
156,674 - 12794 mRNA_4426 0.11 0.1
156,852 + 12794 mRNA_4426 0.18 0.1
156,939 - 12794 mRNA_4426 0.21 -0.5
157,117 + 12794 mRNA_4426 0.28 -0.5
157,408 + 12794 mRNA_4426 0.38 -1.8
157,427 + 12794 mRNA_4426 0.39 2.0
157,440 - 12794 mRNA_4426 0.40 0.4
157,520 - 12794 mRNA_4426 0.43 1.8
157,556 + 12794 mRNA_4426 0.44 1.0
157,577 + 12794 mRNA_4426 0.45 -0.2
157,835 - 12794 mRNA_4426 0.54 0.6
157,951 - 12794 mRNA_4426 0.59 -1.0
158,113 - 12794 mRNA_4426 0.65 2.1
158,259 - 12794 mRNA_4426 0.70 1.1
158,611 + 12794 mRNA_4426 0.83 -0.5
159,018 - 1.4
159,074 - 0.5
159,146 - 1.9
159,230 + 0.1
159,596 + 2.2
159,873 + 1.8
159,873 - -0.9
160,010 + 0.0
160,013 - 1.3
160,025 + 0.1