Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4416

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4415: 12783 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 131419 to 134157 12783 mRNA_4416: 12784 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 134508 to 136011 12784 mRNA_4417: 12785 - Hypothetical Protein, at 136437 to 137903 12785

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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133,511 + 12783 mRNA_4415 0.76 -0.1
133,552 + 12783 mRNA_4415 0.78 0.9
133,620 - 12783 mRNA_4415 0.80 0.9
133,671 + 12783 mRNA_4415 0.82 -0.2
133,700 + 12783 mRNA_4415 0.83 1.0
133,701 + 12783 mRNA_4415 0.83 0.9
133,707 - 12783 mRNA_4415 0.84 0.3
134,039 + 1.1
134,560 + -0.3
134,596 + 0.1
134,625 - 0.1
134,728 + 12784 mRNA_4416 0.15 -0.1
134,875 + 12784 mRNA_4416 0.24 0.7
135,073 - 12784 mRNA_4416 0.38 0.0
135,143 + 12784 mRNA_4416 0.42 0.7
135,149 + 12784 mRNA_4416 0.43 2.1
135,213 + 12784 mRNA_4416 0.47 1.5
135,255 - 12784 mRNA_4416 0.50 0.3
135,336 - 12784 mRNA_4416 0.55 -0.2
135,341 - 12784 mRNA_4416 0.55 -0.4
135,351 - 12784 mRNA_4416 0.56 1.9
135,419 - 12784 mRNA_4416 0.61 2.2
135,427 + 12784 mRNA_4416 0.61 0.3
135,456 + 12784 mRNA_4416 0.63 1.3
135,457 - 12784 mRNA_4416 0.63 0.3
135,465 + 12784 mRNA_4416 0.64 -1.6
135,488 - 12784 mRNA_4416 0.65 0.6
135,499 - 12784 mRNA_4416 0.66 1.3
135,587 + 12784 mRNA_4416 0.72 1.2
135,603 - 12784 mRNA_4416 0.73 1.2
135,669 + 12784 mRNA_4416 0.77 0.3
135,776 - 12784 mRNA_4416 0.84 0.3
135,847 - 12784 mRNA_4416 0.89 0.4
135,903 + -0.6
135,966 + -0.2
136,058 + 1.1
136,176 - 0.3
136,183 - 1.0
136,207 - 0.2
136,207 + 0.7
136,233 + -0.4
136,253 + 1.1
136,394 - 0.9
136,528 + -0.8
136,546 - 2.0
136,694 + 12785 mRNA_4417 0.18 1.0
136,779 + 12785 mRNA_4417 0.23 0.6
136,782 - 12785 mRNA_4417 0.24 -1.0
136,782 + 12785 mRNA_4417 0.24 1.5
136,850 + 12785 mRNA_4417 0.28 1.6