Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4307

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4306: 12674 - Hypothetical Protein, at 1859471 to 1861932 12674 mRNA_4307: 12675 - Hypothetical Protein, at 1861976 to 1862718 12675 mRNA_4308: 12676 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 1863186 to 1865063 12676

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,861,290 - 12674 mRNA_4306 0.74 2.1
1,861,291 + 12674 mRNA_4306 0.74 0.5
1,861,467 + 12674 mRNA_4306 0.81 0.9
1,861,470 + 12674 mRNA_4306 0.81 -0.0
1,861,604 - 12674 mRNA_4306 0.87 2.0
1,861,738 + 0.3
1,861,771 - 0.3
1,861,774 - -0.6
1,861,775 + -0.2
1,861,868 + 1.9
1,861,878 - 0.7
1,861,896 + 1.3
1,861,911 - 0.9
1,861,920 + 0.7
1,861,926 - 0.4
1,861,930 - 0.8
1,861,932 - -0.4
1,862,074 - 12675 mRNA_4307 0.13 0.0
1,862,110 - 12675 mRNA_4307 0.18 -1.3
1,862,113 - 12675 mRNA_4307 0.18 0.7
1,862,195 - 12675 mRNA_4307 0.29 0.2
1,862,199 + 12675 mRNA_4307 0.30 -0.9
1,862,209 - 12675 mRNA_4307 0.31 0.5
1,862,212 + 12675 mRNA_4307 0.32 -0.3
1,862,214 + 12675 mRNA_4307 0.32 1.1
1,862,216 - 12675 mRNA_4307 0.32 1.7
1,862,217 + 12675 mRNA_4307 0.32 0.1
1,862,218 + 12675 mRNA_4307 0.33 0.6
1,862,218 - 12675 mRNA_4307 0.33 0.2
1,862,219 - 12675 mRNA_4307 0.33 0.1
1,862,224 - 12675 mRNA_4307 0.33 -1.4
1,862,226 + 12675 mRNA_4307 0.34 0.2
1,862,234 + 12675 mRNA_4307 0.35 2.3
1,862,236 - 12675 mRNA_4307 0.35 0.1
1,862,237 + 12675 mRNA_4307 0.35 0.6
1,862,240 - 12675 mRNA_4307 0.36 0.1
1,862,240 + 12675 mRNA_4307 0.36 1.0
1,862,248 - 12675 mRNA_4307 0.37 2.6
1,862,253 - 12675 mRNA_4307 0.37 1.6
1,862,253 - 12675 mRNA_4307 0.37 -2.4
1,862,253 - 12675 mRNA_4307 0.37 1.4
1,862,295 - 12675 mRNA_4307 0.43 0.3
1,862,298 + 12675 mRNA_4307 0.43 2.4
1,862,311 + 12675 mRNA_4307 0.45 0.3
1,862,322 - 12675 mRNA_4307 0.47 0.4
1,862,332 - 12675 mRNA_4307 0.48 0.7
1,862,332 + 12675 mRNA_4307 0.48 1.5
1,862,334 - 12675 mRNA_4307 0.48 0.2
1,862,337 + 12675 mRNA_4307 0.49 0.7
1,862,338 + 12675 mRNA_4307 0.49 0.3
1,862,340 - 12675 mRNA_4307 0.49 0.1
1,862,341 - 12675 mRNA_4307 0.49 0.2
1,862,343 + 12675 mRNA_4307 0.49 0.8
1,862,343 + 12675 mRNA_4307 0.49 0.8
1,862,346 + 12675 mRNA_4307 0.50 0.1
1,862,348 + 12675 mRNA_4307 0.50 -1.2
1,862,354 - 12675 mRNA_4307 0.51 -0.4
1,862,354 - 12675 mRNA_4307 0.51 -0.7
1,862,357 - 12675 mRNA_4307 0.51 0.4
1,862,364 + 12675 mRNA_4307 0.52 -1.7
1,862,364 + 12675 mRNA_4307 0.52 -0.4
1,862,365 + 12675 mRNA_4307 0.52 0.8
1,862,367 - 12675 mRNA_4307 0.53 -1.3
1,862,368 + 12675 mRNA_4307 0.53 -1.1
1,862,369 + 12675 mRNA_4307 0.53 1.5
1,862,370 + 12675 mRNA_4307 0.53 2.6
1,862,378 - 12675 mRNA_4307 0.54 -0.4
1,862,380 + 12675 mRNA_4307 0.54 0.5
1,862,380 + 12675 mRNA_4307 0.54 0.3
1,862,386 + 12675 mRNA_4307 0.55 0.8
1,862,391 + 12675 mRNA_4307 0.56 -0.2
1,862,394 + 12675 mRNA_4307 0.56 0.2
1,862,401 - 12675 mRNA_4307 0.57 0.4
1,862,406 - 12675 mRNA_4307 0.58 -1.7
1,862,436 - 12675 mRNA_4307 0.62 0.0
1,862,448 + 12675 mRNA_4307 0.64 0.1
1,862,474 + 12675 mRNA_4307 0.67 0.2
1,862,523 - 12675 mRNA_4307 0.74 0.3
1,862,524 + 12675 mRNA_4307 0.74 0.6
1,862,530 + 12675 mRNA_4307 0.75 -0.8
1,862,547 + 12675 mRNA_4307 0.77 1.7
1,862,551 - 12675 mRNA_4307 0.77 0.7
1,862,592 + 12675 mRNA_4307 0.83 1.4
1,862,595 - 12675 mRNA_4307 0.83 1.4
1,862,603 - 12675 mRNA_4307 0.84 1.1
1,862,604 - 12675 mRNA_4307 0.85 0.1
1,862,606 + 12675 mRNA_4307 0.85 -0.6
1,862,649 + 1.8
1,862,680 + 0.3
1,862,702 + 1.4
1,862,710 + 1.7
1,862,713 + 2.3
1,862,719 + -0.9
1,862,721 - -0.1
1,862,744 - 0.6
1,862,749 - 1.0
1,862,762 + 0.3
1,862,763 + -0.7
1,862,772 - -2.0
1,862,866 - 0.1
1,862,873 - -0.2
1,862,888 + 1.1
1,862,891 + 0.5
1,862,916 + 0.1
1,862,924 - 2.2
1,862,928 + -1.7
1,862,931 - -0.1
1,862,934 - -0.3
1,862,950 - 0.2
1,862,966 - -0.0
1,863,088 - 1.4
1,863,186 - -0.2
1,863,631 - 12676 mRNA_4308 0.24 -0.8
1,863,634 + 12676 mRNA_4308 0.24 1.0
1,863,647 - 12676 mRNA_4308 0.25 0.4