Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4227

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4226: 12594 - K00700 GBE1, glgB 1,4-alpha-glucan branching enzyme, at 1655813 to 1659134 12594 mRNA_4227: 12595 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF48452, at 1659342 to 1664294 12595 mRNA_4228: 12596 - K00995 pgsA, PGS1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1664349 to 1666570 12596

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,658,412 + 12594 mRNA_4226 0.78 -0.2
1,658,482 + 12594 mRNA_4226 0.80 0.6
1,658,507 - 12594 mRNA_4226 0.81 -0.4
1,658,511 + 12594 mRNA_4226 0.81 0.3
1,658,523 + 12594 mRNA_4226 0.82 -0.5
1,658,574 + 12594 mRNA_4226 0.83 -2.2
1,658,661 - 12594 mRNA_4226 0.86 -0.7
1,658,668 + 12594 mRNA_4226 0.86 -2.1
1,658,835 - 1.4
1,658,843 - -0.5
1,658,856 - 0.1
1,658,959 - 1.5
1,658,979 - 0.6
1,658,982 + -0.2
1,659,044 + 2.1
1,659,118 + 0.0
1,659,158 + -0.4
1,659,158 + 1.0
1,659,275 + -1.6
1,659,478 + -0.3
1,659,901 + 12595 mRNA_4227 0.11 -0.0
1,660,271 + 12595 mRNA_4227 0.19 1.0
1,660,294 - 12595 mRNA_4227 0.19 0.3
1,660,650 + 12595 mRNA_4227 0.26 -1.1
1,660,764 - 12595 mRNA_4227 0.29 1.8
1,660,939 - 12595 mRNA_4227 0.32 -0.2
1,660,942 + 12595 mRNA_4227 0.32 -0.0
1,661,345 - 12595 mRNA_4227 0.40 0.3
1,661,516 + 12595 mRNA_4227 0.44 0.7
1,661,519 - 12595 mRNA_4227 0.44 -0.2
1,661,626 + 12595 mRNA_4227 0.46 0.8
1,661,762 - 12595 mRNA_4227 0.49 3.0
1,661,768 - 12595 mRNA_4227 0.49 0.5
1,661,946 + 12595 mRNA_4227 0.53 -0.4
1,661,982 + 12595 mRNA_4227 0.53 0.7
1,662,053 + 12595 mRNA_4227 0.55 2.2
1,662,066 - 12595 mRNA_4227 0.55 0.8
1,662,088 - 12595 mRNA_4227 0.55 0.4
1,662,090 + 12595 mRNA_4227 0.55 0.0
1,662,103 + 12595 mRNA_4227 0.56 0.1
1,662,170 - 12595 mRNA_4227 0.57 0.9
1,662,177 - 12595 mRNA_4227 0.57 -1.2
1,662,183 + 12595 mRNA_4227 0.57 -0.4
1,662,186 - 12595 mRNA_4227 0.57 1.5
1,662,366 - 12595 mRNA_4227 0.61 0.3
1,662,379 + 12595 mRNA_4227 0.61 0.7
1,662,388 + 12595 mRNA_4227 0.61 0.0
1,662,526 + 12595 mRNA_4227 0.64 0.1
1,662,527 - 12595 mRNA_4227 0.64 -0.3
1,662,531 + 12595 mRNA_4227 0.64 1.4
1,662,532 - 12595 mRNA_4227 0.64 -0.5
1,662,534 + 12595 mRNA_4227 0.64 0.3
1,662,537 + 12595 mRNA_4227 0.65 0.1
1,662,688 + 12595 mRNA_4227 0.68 0.2
1,662,837 + 12595 mRNA_4227 0.71 0.9
1,662,841 - 12595 mRNA_4227 0.71 0.2
1,662,845 + 12595 mRNA_4227 0.71 -0.0
1,662,846 - 12595 mRNA_4227 0.71 -0.1
1,663,272 + 12595 mRNA_4227 0.79 2.1
1,663,540 - 12595 mRNA_4227 0.85 -1.0
1,663,607 - 12595 mRNA_4227 0.86 1.6
1,663,698 + 12595 mRNA_4227 0.88 0.3
1,663,988 - 3.0
1,664,095 - 0.2
1,664,115 - 1.1
1,664,159 + 0.5
1,664,201 - 1.0
1,664,275 - 0.0
1,664,297 + 0.4
1,664,380 + -0.4
1,664,397 - -0.7
1,664,439 + 0.1