Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4137

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4137: 12505 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 1443015 to 1447458 12505 mRNA_4138: 12506 - HMMPfam-Cytochrome c oxidase subunit VIIa-PF02238, at 1448098 to 1448646 12506

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,442,134 + 2.0
1,442,142 + -1.4
1,442,258 - 1.0
1,442,261 - 0.0
1,442,262 + 0.6
1,442,267 - 0.6
1,442,292 - 1.2
1,442,309 - 1.3
1,442,310 + 1.8
1,442,338 + 0.2
1,442,458 - -0.0
1,442,462 + -0.2
1,442,475 - -0.0
1,442,483 - -0.7
1,442,612 + 0.7
1,442,624 + -0.5
1,442,758 - -0.6
1,442,768 + -0.5
1,442,776 + -0.6
1,442,783 - 3.1
1,442,784 - 0.6
1,442,784 + -0.4
1,442,792 - 0.7
1,442,797 + 0.8
1,442,929 + 0.0
1,442,941 + 0.4
1,442,981 + -1.5
1,443,091 - -0.1
1,443,222 - 2.0
1,443,379 - 2.3
1,443,524 - 12505 mRNA_4137 0.11 -0.1
1,443,663 - 12505 mRNA_4137 0.15 -0.0
1,443,787 + 12505 mRNA_4137 0.17 0.3
1,443,952 - 12505 mRNA_4137 0.21 1.8
1,444,239 + 12505 mRNA_4137 0.28 0.9
1,444,410 - 12505 mRNA_4137 0.31 1.7
1,444,546 - 12505 mRNA_4137 0.34 1.0
1,444,730 - 12505 mRNA_4137 0.39 1.7
1,444,823 - 12505 mRNA_4137 0.41 -0.2
1,444,840 + 12505 mRNA_4137 0.41 2.0
1,444,857 + 12505 mRNA_4137 0.41 1.1
1,445,225 + 12505 mRNA_4137 0.50 -1.4
1,445,433 + 12505 mRNA_4137 0.54 -0.4
1,446,050 + 12505 mRNA_4137 0.68 -0.1
1,446,126 - 12505 mRNA_4137 0.70 -1.3
1,446,186 + 12505 mRNA_4137 0.71 -1.3
1,446,266 + 12505 mRNA_4137 0.73 -1.0
1,446,470 - 12505 mRNA_4137 0.78 -0.6
1,446,620 - 12505 mRNA_4137 0.81 -0.7
1,446,663 + 12505 mRNA_4137 0.82 -1.0
1,447,015 + 0.8
1,447,065 + 0.4
1,447,069 + 0.9
1,447,212 - 0.2
1,447,217 + 0.5
1,447,478 - -0.4
1,447,570 - -1.1
1,447,770 - 2.6
1,447,788 + 0.3
1,447,947 + 0.0
1,447,950 + -0.2
1,448,046 + 1.5
1,448,060 + -1.5
1,448,060 - 1.1
1,448,215 - 12506 mRNA_4138 0.21 -0.3
1,448,363 + 12506 mRNA_4138 0.48 -0.4
1,448,439 - 12506 mRNA_4138 0.62 -0.1