Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4116

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4115: 12483 - BLAST Nuclear receptor corepressor 2 [Rhizoctonia solani], at 1383880 to 1387227 12483 mRNA_4116: 12484 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1387414 to 1388698 12484 mRNA_4117: 12485 - K15728 LPIN phosphatidate phosphatase LPIN, at 1388981 to 1392980 12485

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,386,504 + 12483 mRNA_4115 0.78 0.3
1,386,585 + 12483 mRNA_4115 0.81 0.3
1,386,633 - 12483 mRNA_4115 0.82 0.6
1,386,761 - 12483 mRNA_4115 0.86 1.4
1,386,789 + 12483 mRNA_4115 0.87 -1.0
1,387,051 - 0.2
1,387,072 + 2.0
1,387,229 + 0.5
1,387,235 - 0.4
1,387,285 - -0.5
1,387,319 - 1.1
1,387,336 - 0.1
1,387,339 + -0.1
1,387,340 + 1.9
1,387,353 + 1.7
1,387,366 - 0.0
1,387,376 + -0.1
1,387,378 - 0.1
1,387,393 - -0.6
1,387,402 + 0.9
1,387,538 + 0.9
1,387,802 + 12484 mRNA_4116 0.30 1.5
1,387,817 - 12484 mRNA_4116 0.31 0.7
1,387,818 - 12484 mRNA_4116 0.31 -0.1
1,387,962 - 12484 mRNA_4116 0.43 -0.3
1,388,376 + 12484 mRNA_4116 0.75 0.5
1,388,391 + 12484 mRNA_4116 0.76 1.7
1,388,658 - 0.7
1,388,678 - -0.1
1,388,796 - -0.4
1,388,816 + 0.2
1,388,822 - -0.4