Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4060

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4059: 12427 - Hypothetical Protein, at 1255618 to 1257004 12427 mRNA_4060: 12428 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 1257194 to 1260711 12428 mRNA_4061: 12429 - SUPERFAMILY--SSF52540, at 1260882 to 1262989 12429

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,256,327 + 12427 mRNA_4059 0.51 1.2
1,256,384 - 12427 mRNA_4059 0.55 0.0
1,256,555 - 12427 mRNA_4059 0.68 0.2
1,256,666 + 12427 mRNA_4059 0.76 -0.2
1,256,671 - 12427 mRNA_4059 0.76 -0.1
1,256,679 - 12427 mRNA_4059 0.76 1.5
1,256,994 + 0.7
1,257,162 + -0.7
1,257,280 + 1.1
1,257,726 - 12428 mRNA_4060 0.15 1.8
1,257,730 + 12428 mRNA_4060 0.15 -0.0
1,257,996 - 12428 mRNA_4060 0.23 -0.1
1,258,451 + 12428 mRNA_4060 0.36 0.6
1,259,071 + 12428 mRNA_4060 0.53 1.9
1,260,477 - -0.2
1,260,643 + 0.4
1,260,801 - 0.5
1,260,805 - -0.4
1,260,937 + 1.9
1,260,982 + 1.8
1,261,091 + 0.0
1,261,104 - 12429 mRNA_4061 0.11 -1.0
1,261,245 - 12429 mRNA_4061 0.17 0.1
1,261,416 + 12429 mRNA_4061 0.25 0.2
1,261,504 + 12429 mRNA_4061 0.30 1.0
1,261,571 + 12429 mRNA_4061 0.33 -0.5
1,261,633 - 12429 mRNA_4061 0.36 1.2
1,261,675 + 12429 mRNA_4061 0.38 -0.1
1,261,675 + 12429 mRNA_4061 0.38 -0.1