Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4052

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4051: 12419 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 1242225 to 1242676 12419 mRNA_4052: 12420 - HMMPfam-Transcription factor Opi1-PF08618, at 1243077 to 1245269 12420 mRNA_4053: 12421 - K00602 purH phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase, at 1245651 to 1248069 12421

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,242,318 - 12419 mRNA_4051 0.21 2.3
1,242,586 - 12419 mRNA_4051 0.80 0.7
1,242,606 - 12419 mRNA_4051 0.84 0.7
1,242,913 + 2.6
1,242,925 + -0.3
1,243,009 - -0.2
1,243,009 + -0.2
1,243,030 + 1.2
1,243,432 - 12420 mRNA_4052 0.16 -0.2
1,243,618 - 12420 mRNA_4052 0.25 -0.2
1,244,367 - 12420 mRNA_4052 0.59 -2.0
1,244,477 - 12420 mRNA_4052 0.64 -1.2
1,244,608 + 12420 mRNA_4052 0.70 -0.9
1,244,768 + 12420 mRNA_4052 0.77 -0.7
1,244,791 + 12420 mRNA_4052 0.78 0.9
1,244,922 - 12420 mRNA_4052 0.84 -1.7
1,244,928 + 12420 mRNA_4052 0.84 0.2
1,245,061 - 2.6
1,245,066 - -1.3
1,245,089 + -1.1
1,245,193 - -0.0
1,245,198 - -0.3
1,245,201 + 0.7
1,245,343 - 1.3
1,245,353 + -0.7
1,245,357 - -1.3
1,245,364 - 0.7
1,245,365 + -0.3
1,245,395 - 1.3
1,245,411 + 0.3
1,245,512 - -0.4
1,245,624 + 0.4