Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4038

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4037: 12405 - K12232 HECTD2 E3 ubiquitin-protein ligase HECTD2, at 1210152 to 1214937 12405 mRNA_4038: 12406 - K10772 APEX2 AP endonuclease 2, at 1215030 to 1217455 12406 mRNA_4039: 12407 - K00825 AADAT, KAT2 kynurenine/2-aminoadipate aminotransferase, at 1217761 to 1219740 12407

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,214,258 - 12405 mRNA_4037 0.86 0.3
1,214,400 - 12405 mRNA_4037 0.89 -0.2
1,214,550 + 0.9
1,214,977 + -0.3
1,214,990 - 0.6
1,215,008 + 0.0
1,215,294 - 12406 mRNA_4038 0.11 -0.3
1,215,302 + 12406 mRNA_4038 0.11 0.4
1,215,327 + 12406 mRNA_4038 0.12 -1.1
1,215,589 + 12406 mRNA_4038 0.23 -1.0
1,216,010 - 12406 mRNA_4038 0.40 -0.3
1,216,012 + 12406 mRNA_4038 0.40 1.4
1,216,165 - 12406 mRNA_4038 0.47 -0.0
1,216,460 + 12406 mRNA_4038 0.59 0.7
1,216,484 + 12406 mRNA_4038 0.60 -0.7
1,216,741 - 12406 mRNA_4038 0.71 0.3
1,217,188 + 12406 mRNA_4038 0.89 -0.2
1,217,194 - 12406 mRNA_4038 0.89 -0.7
1,217,199 - 12406 mRNA_4038 0.89 1.3
1,217,255 + 1.5
1,217,335 - -1.1
1,217,348 - 0.1
1,217,462 + 0.4
1,217,480 - 0.0
1,217,494 - -0.9
1,217,504 + 1.2
1,217,631 - -0.5
1,217,632 - 0.0
1,217,633 + -0.2
1,217,638 - 1.1
1,217,643 - 1.0
1,217,643 - 0.3
1,217,652 + -1.1
1,217,787 - 0.6
1,217,799 + 1.1
1,217,799 + -0.8
1,217,949 + -0.1