Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4022

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4021: 12389 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1178215 to 1180562 12389 mRNA_4022: 12390 - KOG2661 Peptidase family M48, at 1180594 to 1181890 12390 mRNA_4023: 12391 - K01061 E3.1.1.45 carboxymethylenebutenolidase, at 1182056 to 1183388 12391

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,179,605 - 12389 mRNA_4021 0.59 0.1
1,179,612 + 12389 mRNA_4021 0.59 1.6
1,180,191 + 12389 mRNA_4021 0.84 0.2
1,180,778 - 12390 mRNA_4022 0.14 1.1
1,180,806 + 12390 mRNA_4022 0.16 2.5
1,180,835 + 12390 mRNA_4022 0.19 0.0
1,181,590 + 12390 mRNA_4022 0.77 1.2
1,181,677 - 12390 mRNA_4022 0.84 -0.6
1,181,957 + 0.5
1,181,960 + -0.1
1,182,117 - 0.5
1,182,253 + 12391 mRNA_4023 0.15 0.6
1,182,253 + 12391 mRNA_4023 0.15 0.4
1,182,848 + 12391 mRNA_4023 0.59 0.3