Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3994

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3993: 12361 - KOG0627 Heat shock transcription factor, at 1098297 to 1099754 12361 mRNA_3994: 12362 - K11484 HOS3 histone deacetylase HOS3, at 1100356 to 1102987 12362 mRNA_3995: 12363 - Hypothetical Protein, at 1103098 to 1103672 12363

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,099,486 - 12361 mRNA_3993 0.82 1.1
1,099,731 - 1.1
1,099,778 - -1.4
1,099,791 + -0.6
1,099,793 + -0.0
1,099,822 + 1.0
1,099,903 + -0.8
1,099,904 + -0.3
1,099,913 - 2.0
1,099,923 - 0.1
1,099,960 + 1.4
1,099,960 + 1.0
1,099,964 - 0.3
1,099,973 - 0.7
1,099,977 - 0.4
1,099,978 + 0.4
1,099,989 - 0.1
1,100,016 + 1.9
1,100,021 + -0.8
1,100,044 - 0.9
1,100,045 + 0.0
1,100,056 + -0.4
1,100,078 + 2.4
1,100,094 - -0.2
1,100,124 + 0.1
1,100,200 + 1.1
1,100,203 - -0.7
1,100,245 - 1.5
1,100,250 - 0.3
1,100,410 + -0.6
1,100,843 - 12362 mRNA_3994 0.19 -0.2
1,100,850 + 12362 mRNA_3994 0.19 -1.0
1,100,864 - 12362 mRNA_3994 0.19 1.0
1,100,979 - 12362 mRNA_3994 0.24 0.7
1,100,993 + 12362 mRNA_3994 0.24 0.1
1,101,265 - 12362 mRNA_3994 0.35 -0.4
1,101,856 - 12362 mRNA_3994 0.57 1.3
1,101,883 - 12362 mRNA_3994 0.58 1.1
1,102,559 - 12362 mRNA_3994 0.84 -0.9
1,102,731 - -0.0
1,102,740 + -0.3
1,102,753 + 0.7
1,102,875 - 0.5
1,102,890 - 0.1
1,103,017 - -0.4
1,103,018 - -0.3
1,103,035 - 1.3
1,103,044 + 0.7