Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3937

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3936: 12304 - Hypothetical Protein, at 945661 to 946219 12304 mRNA_3937: 12305 - KOG0692 Pentafunctional AROM protein, at 946371 to 947832 12305 mRNA_3938: 12306 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 948000 to 949684 12306

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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945,403 - -0.8
945,404 - 1.5
945,404 - -0.4
945,542 - 2.2
945,546 - 0.3
945,548 + 0.8
945,549 + 0.1
945,562 + 2.2
945,880 + 12304 mRNA_3936 0.39 -0.2
946,093 - 12304 mRNA_3936 0.77 -0.3
946,250 - 0.3
947,268 + 12305 mRNA_3937 0.61 -0.4
947,294 + 12305 mRNA_3937 0.63 2.2
947,433 - 12305 mRNA_3937 0.73 0.5
947,436 + 12305 mRNA_3937 0.73 -0.2
947,560 - 12305 mRNA_3937 0.81 -1.8
947,592 - 12305 mRNA_3937 0.84 -0.4
947,596 + 12305 mRNA_3937 0.84 -0.2
947,714 - -0.5
947,721 + 1.1
947,738 - 1.3
947,780 - 0.0
947,886 + -1.7
948,032 - -0.2
948,309 + 12306 mRNA_3938 0.18 -0.9
948,459 - 12306 mRNA_3938 0.27 1.8
948,590 + 12306 mRNA_3938 0.35 -0.2
948,766 + 12306 mRNA_3938 0.45 0.1
948,806 + 12306 mRNA_3938 0.48 -0.4