Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3883

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3882: 12250 - Hypothetical Protein, at 815200 to 816864 12250 mRNA_3883: 12251 - K01784 galE, GALE UDP-glucose 4-epimerase, at 817567 to 820111 12251 mRNA_3884: 12252 - Hypothetical Protein, at 820246 to 821511 12252

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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816,591 - 12250 mRNA_3882 0.84 0.5
816,601 + 12250 mRNA_3882 0.84 -0.9
816,851 + -0.7
816,857 + 0.0
816,865 + 0.8
816,904 - 0.9
816,915 - 0.1
817,016 + 0.5
817,037 - -0.1
817,040 + -0.4
817,041 - 0.7
817,054 - 0.8
817,060 - -0.3
817,063 + 1.1
817,068 + 0.1
817,068 + -0.2
817,104 + 0.0
817,111 + 1.0
817,112 - -0.1
817,115 + 0.4
817,133 + -0.5
817,141 + 0.9
817,161 - -0.0
817,168 + 2.2
817,169 - 1.8
817,179 + 0.7
817,183 - -0.3
817,195 - -0.4
817,196 + 1.1
817,201 + 2.4
817,274 - 0.0
817,344 + 0.8
817,351 + -0.1
817,372 + 0.7
817,383 + 0.1
817,489 - 0.3
817,501 - 0.5
817,503 + 1.6
817,512 + 0.8
817,518 - 0.9
817,623 - 0.3
817,646 + -1.5
817,651 + 0.3
817,660 + 0.7
817,694 + 0.7
817,831 - 12251 mRNA_3883 0.10 0.2
817,909 - 12251 mRNA_3883 0.13 -0.5
817,968 + 12251 mRNA_3883 0.16 1.6
817,975 + 12251 mRNA_3883 0.16 -0.3
818,098 - 12251 mRNA_3883 0.21 0.0
818,266 + 12251 mRNA_3883 0.27 -0.5
818,463 - 12251 mRNA_3883 0.35 -0.8
818,676 - 12251 mRNA_3883 0.44 -0.1
818,697 - 12251 mRNA_3883 0.44 1.6
818,829 + 12251 mRNA_3883 0.50 -0.4
818,832 - 12251 mRNA_3883 0.50 0.2
818,875 + 12251 mRNA_3883 0.51 0.2
819,026 + 12251 mRNA_3883 0.57 1.2
819,307 + 12251 mRNA_3883 0.68 -0.0
819,623 - 12251 mRNA_3883 0.81 1.2
820,020 + 0.1
820,055 - 0.3
820,162 + -1.0
820,203 + 1.3
820,328 - 0.9
820,351 + 0.8
820,560 + 12252 mRNA_3884 0.25 2.0
820,587 - 12252 mRNA_3884 0.27 0.0
820,658 - 12252 mRNA_3884 0.33 -0.2
820,914 + 12252 mRNA_3884 0.53 -0.2
820,927 - 12252 mRNA_3884 0.54 2.1
821,072 + 12252 mRNA_3884 0.65 0.1