Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3881

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3880: 12248 - K00262 E1.4.1.4, gdhA glutamate dehydrogenase (NADP+), at 812217 to 813988 12248 mRNA_3881: 12249 - Hypothetical Protein, at 814368 to 814862 12249 mRNA_3882: 12250 - Hypothetical Protein, at 815200 to 816864 12250

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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813,371 - 12248 mRNA_3880 0.65 0.0
813,668 + 12248 mRNA_3880 0.82 -2.3
813,906 - -1.6
813,937 + -1.7
814,071 + 1.3
814,073 + 0.6
814,079 - 0.4
814,086 - 1.4
814,086 - 2.1
814,093 - 0.7
814,094 + 1.0
814,095 + -0.0
814,098 - 0.6
814,110 - -0.4
814,113 + 0.3
814,119 - 0.3
814,121 + 0.9
814,128 + 1.1
814,137 - 2.0
814,138 - 0.1
814,144 + -0.4
814,152 - -0.0
814,154 - -0.8
814,162 + 1.4
814,162 - 2.2
814,171 - 0.1
814,189 - 0.5
814,197 + 1.0
814,304 + -1.5
814,305 - -1.7
814,316 + 1.3
814,317 - 0.4
814,320 - 0.5
814,333 + -0.1
814,334 + 0.3
814,356 + -0.2
814,386 - -0.4
814,398 - 0.1
814,402 - -0.1
814,405 + 0.8
814,421 - 12249 mRNA_3881 0.11 -0.5
814,422 + 12249 mRNA_3881 0.11 -1.1
814,472 - 12249 mRNA_3881 0.21 0.4
814,477 + 12249 mRNA_3881 0.22 1.2
814,478 - 12249 mRNA_3881 0.22 -0.9
814,492 - 12249 mRNA_3881 0.25 0.9
814,492 + 12249 mRNA_3881 0.25 0.2
814,499 + 12249 mRNA_3881 0.26 0.1
814,506 - 12249 mRNA_3881 0.28 0.9
814,529 - 12249 mRNA_3881 0.33 -0.7
814,539 + 12249 mRNA_3881 0.35 0.6
814,582 - 12249 mRNA_3881 0.43 0.5
814,651 - 12249 mRNA_3881 0.57 2.3
814,799 - 12249 mRNA_3881 0.87 1.0
814,806 - 12249 mRNA_3881 0.88 2.1
814,806 - 12249 mRNA_3881 0.88 0.3
814,942 + 1.5
814,943 - 0.3
814,951 - 1.2
814,973 + 0.4
815,124 - 0.1
815,731 + 12250 mRNA_3882 0.32 0.2
815,856 + 12250 mRNA_3882 0.39 -0.4