Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3869

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3868: 12236 - KOG0603 Ribosomal protein S6 kinase, at 783972 to 787068 12236 mRNA_3869: 12237 - KOG3207 Beta-tubulin folding cofactor E, at 787277 to 789620 12237 mRNA_3870: 12238 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407,SUPERFAMILY--SSF53448, at 789914 to 792634 12238

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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786,467 + 12236 mRNA_3868 0.81 1.3
786,632 + 12236 mRNA_3868 0.86 -0.6
786,635 - 12236 mRNA_3868 0.86 -0.1
787,396 - 0.2
787,779 - 12237 mRNA_3869 0.21 0.2
788,134 - 12237 mRNA_3869 0.37 -0.6
788,237 - 12237 mRNA_3869 0.41 -0.2
788,378 - 12237 mRNA_3869 0.47 2.2
788,379 + 12237 mRNA_3869 0.47 -0.6
788,384 - 12237 mRNA_3869 0.47 -0.7
788,667 - 12237 mRNA_3869 0.59 2.3
788,859 - 12237 mRNA_3869 0.67 0.4
788,930 - 12237 mRNA_3869 0.71 -0.7
788,964 + 12237 mRNA_3869 0.72 -1.2
789,098 - 12237 mRNA_3869 0.78 0.1
789,228 + 12237 mRNA_3869 0.83 -0.0
789,386 + 0.9
789,394 + 0.0
789,395 + 0.5
789,709 - 0.1
789,719 + -0.9
789,844 - 0.5
790,002 + -1.0
790,309 - 12238 mRNA_3870 0.15 -0.7
790,350 - 12238 mRNA_3870 0.16 0.9
790,482 + 12238 mRNA_3870 0.21 2.4
790,616 - 12238 mRNA_3870 0.26 -0.3