Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3868

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3867: 12235 - KOG1812 Predicted E3 ubiquitin ligase, at 782825 to 783717 12235 mRNA_3868: 12236 - KOG0603 Ribosomal protein S6 kinase, at 783972 to 787068 12236 mRNA_3869: 12237 - KOG3207 Beta-tubulin folding cofactor E, at 787277 to 789620 12237

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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783,011 - 12235 mRNA_3867 0.21 0.2
783,491 + 12235 mRNA_3867 0.75 -0.2
783,625 - 12235 mRNA_3867 0.90 1.2
783,695 - 0.8
783,702 + 1.3
783,709 - 2.1
783,736 + 0.1
783,742 + -0.3
783,751 + 0.1
783,770 + 0.0
783,777 + 1.2
783,781 - -0.6
783,933 - -0.0
783,934 - 0.6
783,938 - -0.4
783,952 + 0.2
783,966 + 0.3
784,120 + -0.6
784,251 + 0.4
784,414 + 12236 mRNA_3868 0.14 0.5
784,586 + 12236 mRNA_3868 0.20 -0.2
784,742 + 12236 mRNA_3868 0.25 -0.1
784,995 - 12236 mRNA_3868 0.33 2.3
785,017 - 12236 mRNA_3868 0.34 -0.4
785,215 + 12236 mRNA_3868 0.40 -0.6
785,215 + 12236 mRNA_3868 0.40 0.3
785,218 - 12236 mRNA_3868 0.40 0.7
785,289 - 12236 mRNA_3868 0.43 -0.9
785,639 - 12236 mRNA_3868 0.54 -0.3
785,912 - 12236 mRNA_3868 0.63 -0.8
785,917 - 12236 mRNA_3868 0.63 1.7
785,972 - 12236 mRNA_3868 0.65 1.4
786,053 + 12236 mRNA_3868 0.67 0.6
786,166 - 12236 mRNA_3868 0.71 3.2
786,170 + 12236 mRNA_3868 0.71 -0.9
786,467 + 12236 mRNA_3868 0.81 1.3
786,632 + 12236 mRNA_3868 0.86 -0.6
786,635 - 12236 mRNA_3868 0.86 -0.1
787,396 - 0.2
787,779 - 12237 mRNA_3869 0.21 0.2