Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3859

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3858: 12226 - K17890 ATG16L1 autophagy-related protein 16-1, at 757885 to 761783 12226 mRNA_3859: 12227 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 762082 to 763041 12227 mRNA_3860: 12228 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 763401 to 765833 12228

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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761,221 + 12226 mRNA_3858 0.86 0.5
761,481 - 0.9
761,511 - -0.2
761,590 - 0.3
761,650 + -0.4
761,838 + 1.4
762,365 - 12227 mRNA_3859 0.29 0.5
762,366 + 12227 mRNA_3859 0.30 2.2
762,379 + 12227 mRNA_3859 0.31 0.2
762,413 - 12227 mRNA_3859 0.34 1.4
762,552 + 12227 mRNA_3859 0.49 0.3
762,570 + 12227 mRNA_3859 0.51 0.3
762,669 - 12227 mRNA_3859 0.61 3.4
763,096 - 0.1
763,111 - 0.7
763,130 + 1.0
763,276 - -0.0
763,418 - 0.0
763,540 + -0.2
763,652 + 12228 mRNA_3860 0.10 0.1
763,654 - 12228 mRNA_3860 0.10 -0.0
763,866 - 12228 mRNA_3860 0.19 1.2
763,931 - 12228 mRNA_3860 0.22 0.3
763,976 - 12228 mRNA_3860 0.24 0.2
763,977 + 12228 mRNA_3860 0.24 -0.0
763,977 + 12228 mRNA_3860 0.24 -0.6