Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3853

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3852: 12220 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF00043,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 744290 to 745525 12220 mRNA_3853: 12221 - K08193 SLC17A MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other, at 746204 to 748742 12221 mRNA_3854: 12222 - Hypothetical Protein, at 749490 to 750342 12222

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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745,279 - 12220 mRNA_3852 0.80 -0.1
745,296 + 12220 mRNA_3852 0.81 -0.1
745,420 - 0.5
745,423 - 0.4
745,538 + -0.0
745,664 + 0.8
745,896 + -1.6
746,470 + 12221 mRNA_3853 0.10 0.4
746,697 - 12221 mRNA_3853 0.19 -1.1
746,768 + 12221 mRNA_3853 0.22 0.6
746,847 + 12221 mRNA_3853 0.25 2.7
746,899 + 12221 mRNA_3853 0.27 -0.9
747,036 + 12221 mRNA_3853 0.33 -0.7
747,285 + 12221 mRNA_3853 0.43 -0.6
747,750 - 12221 mRNA_3853 0.61 0.6
748,050 - 12221 mRNA_3853 0.73 0.5
748,215 + 12221 mRNA_3853 0.79 1.6
748,220 + 12221 mRNA_3853 0.79 0.2
748,648 - 1.6
748,650 + 1.2
748,657 + -0.1
748,782 - 0.3
748,800 + -1.8
748,810 - -0.2
748,814 - 0.2
748,831 + -1.0
748,912 + 0.9
748,914 + 0.3
748,915 - -0.3
748,931 + -0.1
748,935 + 0.8
748,936 - -0.3
748,937 + -0.1
748,939 - 1.1
748,948 + 0.3
748,953 - 0.1
748,976 - -0.6
748,982 + 1.1
748,991 + 0.5
748,998 - 0.9
749,044 + 0.4
749,048 - 0.2
749,057 - -0.6
749,058 - 0.5
749,063 - -0.0
749,068 + -0.6
749,071 + -0.1
749,072 + 0.7
749,089 - 1.0
749,096 + 0.3
749,098 - 0.3
749,225 + 2.1
749,227 - 0.7
749,243 - 0.1
749,251 - 1.9
749,258 - 2.8
749,259 + 0.4
749,263 + 1.3
749,266 + 0.6
749,268 - 0.5
749,283 + -0.3
749,364 - -0.2
749,373 - 1.1
749,374 + 0.4
749,379 + -1.3
749,388 - 0.3
749,392 + 1.3
749,393 - 1.1
749,395 + 0.9
749,402 + 1.7
749,402 + 0.5
749,409 + 1.5
749,416 - -1.5
749,422 + -0.1
749,423 + 0.8
749,425 - 0.0
749,425 + -0.3
749,538 + 1.3
749,583 - 12222 mRNA_3854 0.11 0.9
749,588 - 12222 mRNA_3854 0.11 -2.4
749,661 - 12222 mRNA_3854 0.20 0.4