Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3852

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3851: 12219 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 742055 to 744016 12219 mRNA_3852: 12220 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF00043,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 744290 to 745525 12220 mRNA_3853: 12221 - K08193 SLC17A MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other, at 746204 to 748742 12221

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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743,389 + 12219 mRNA_3851 0.68 0.5
743,792 - 12219 mRNA_3851 0.89 2.1
743,871 + 0.2
743,927 - 1.0
743,928 + 1.9
743,940 - 0.5
743,956 - 1.1
743,961 + -0.6
744,053 + 1.5
744,075 - -0.0
744,086 + 1.1
744,101 - -0.4
744,116 - 0.3
744,119 + 1.6
744,126 + -0.4
744,127 - -0.9
744,127 + 1.5
744,151 - 0.1
744,254 - -1.2
744,269 + -0.6
744,396 + -2.5
744,661 + 12220 mRNA_3852 0.30 0.8
744,967 - 12220 mRNA_3852 0.55 0.4
744,977 - 12220 mRNA_3852 0.56 0.1
744,978 - 12220 mRNA_3852 0.56 -0.6
745,104 + 12220 mRNA_3852 0.66 0.2
745,114 - 12220 mRNA_3852 0.67 0.6
745,124 - 12220 mRNA_3852 0.67 0.5
745,132 - 12220 mRNA_3852 0.68 0.9
745,279 - 12220 mRNA_3852 0.80 -0.1
745,296 + 12220 mRNA_3852 0.81 -0.1
745,420 - 0.5
745,423 - 0.4
745,538 + -0.0
745,664 + 0.8
745,896 + -1.6
746,470 + 12221 mRNA_3853 0.10 0.4