Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3838

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3837: 12205 - K01044 CES1 carboxylesterase 1, at 704391 to 706480 12205 mRNA_3838: 12206 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 706826 to 713191 12206 mRNA_3839: 12207 - BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh..., at 713356 to 714077 12207

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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705,896 - 12205 mRNA_3837 0.72 -1.2
706,398 + 0.8
706,494 - 0.2
707,153 - 0.8
707,819 - 12206 mRNA_3838 0.16 -0.1
708,040 - 12206 mRNA_3838 0.19 0.6
708,140 - 12206 mRNA_3838 0.21 0.6
709,031 + 12206 mRNA_3838 0.35 -0.8
709,236 + 12206 mRNA_3838 0.38 -1.2
709,332 - 12206 mRNA_3838 0.39 0.4
709,484 - 12206 mRNA_3838 0.42 0.4
709,651 - 12206 mRNA_3838 0.44 -0.1
710,645 - 12206 mRNA_3838 0.60 0.7
710,652 + 12206 mRNA_3838 0.60 1.1
710,809 - 12206 mRNA_3838 0.63 0.5
710,875 + 12206 mRNA_3838 0.64 -1.5
710,932 - 12206 mRNA_3838 0.64 2.0
711,681 + 12206 mRNA_3838 0.76 -0.2
711,688 + 12206 mRNA_3838 0.76 -0.1
712,144 + 12206 mRNA_3838 0.84 -0.9
712,423 - 12206 mRNA_3838 0.88 2.2
712,660 + 0.9
712,686 - -0.1
712,990 + 0.9
713,000 - 1.6
713,141 - -0.0
713,311 + 1.0
713,424 - -1.2
713,568 + 12207 mRNA_3839 0.29 0.6
713,577 - 12207 mRNA_3839 0.31 -0.6
714,021 + -0.5
714,033 + -0.7
714,091 - -2.2