Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3816

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3815: 12183 - K06631 PLK1 polo-like kinase 1, at 644354 to 647784 12183 mRNA_3816: 12184 - KOG3613 Dopey and related predicted leucine zipper transcription factors, at 648075 to 655221 12184 mRNA_3817: 12185 - SUPERFAMILY--SSF52047, at 655525 to 657844 12185

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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647,270 + 12183 mRNA_3815 0.85 -0.0
648,244 + -0.8
648,326 - -0.7
648,362 - -0.3
648,420 + -0.1
648,523 - 2.2
648,535 - -0.2
648,739 - 0.7
648,791 - 12184 mRNA_3816 0.10 0.9
648,854 + 12184 mRNA_3816 0.11 1.7
648,989 + 12184 mRNA_3816 0.13 -0.8
649,019 - 12184 mRNA_3816 0.13 0.8
649,120 - 12184 mRNA_3816 0.15 -0.2
649,363 - 12184 mRNA_3816 0.18 1.0
649,464 + 12184 mRNA_3816 0.19 -0.8
649,561 - 12184 mRNA_3816 0.21 0.8
649,576 + 12184 mRNA_3816 0.21 -0.3
649,665 + 12184 mRNA_3816 0.22 1.0
650,007 + 12184 mRNA_3816 0.27 0.5
650,120 - 12184 mRNA_3816 0.29 1.5
650,144 - 12184 mRNA_3816 0.29 -0.7
650,665 - 12184 mRNA_3816 0.36 -0.2
650,911 - 12184 mRNA_3816 0.40 1.3
650,950 + 12184 mRNA_3816 0.40 0.4
650,950 - 12184 mRNA_3816 0.40 -0.6
650,950 - 12184 mRNA_3816 0.40 1.0
651,044 + 12184 mRNA_3816 0.42 -0.3
651,088 + 12184 mRNA_3816 0.42 0.3
651,255 + 12184 mRNA_3816 0.44 1.3
651,496 + 12184 mRNA_3816 0.48 -0.3
651,496 + 12184 mRNA_3816 0.48 -1.0
651,534 + 12184 mRNA_3816 0.48 2.4
651,579 + 12184 mRNA_3816 0.49 -0.3
651,792 - 12184 mRNA_3816 0.52 0.5
651,959 - 12184 mRNA_3816 0.54 -0.6
652,388 - 12184 mRNA_3816 0.60 0.6
652,468 + 12184 mRNA_3816 0.61 0.4
653,021 + 12184 mRNA_3816 0.69 1.3
653,114 - 12184 mRNA_3816 0.71 -0.3
653,148 - 12184 mRNA_3816 0.71 0.7
653,268 + 12184 mRNA_3816 0.73 0.2
653,333 + 12184 mRNA_3816 0.74 0.9
653,347 - 12184 mRNA_3816 0.74 1.1
653,355 + 12184 mRNA_3816 0.74 0.4
653,432 + 12184 mRNA_3816 0.75 0.2
653,486 + 12184 mRNA_3816 0.76 0.6
653,512 - 12184 mRNA_3816 0.76 0.8
653,896 + 12184 mRNA_3816 0.81 0.4
654,319 + 12184 mRNA_3816 0.87 2.6
654,630 + 0.7
654,720 + 2.3
654,874 - 0.3
654,877 - 2.6
654,903 - 1.1
655,022 - 0.7
655,026 - 0.2
655,039 + 0.1
655,150 - -0.3
655,169 + 0.0
655,179 + -0.8
655,185 - -1.3
655,191 + 0.3
655,195 + -0.3
655,211 - 1.2
655,342 - -0.4
655,496 - 0.2
655,507 - 1.1
655,538 - 1.3
655,564 - 1.5
655,771 - 12185 mRNA_3817 0.11 -0.2
655,833 - 12185 mRNA_3817 0.13 -0.2
656,113 - 12185 mRNA_3817 0.25 -0.5