Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3781

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3781: 12149 - K12821 PRPF40, PRP40 pre-mRNA-processing factor 40, at 565558 to 568249 12149 mRNA_3782: 12150 - K04354 PPP2R2 serine/threonine-protein phosphatase 2A regulatory subunit B, at 568603 to 571218 12150

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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564,642 - -0.3
564,762 + 0.8
565,145 + 2.0
565,147 - 0.0
565,418 + -0.5
565,424 + -0.3
565,723 - 1.9
565,848 - 12149 mRNA_3781 0.11 0.4
565,855 + 12149 mRNA_3781 0.11 -0.3
565,992 + 12149 mRNA_3781 0.16 -1.7
566,025 + 12149 mRNA_3781 0.17 0.8
566,494 - 12149 mRNA_3781 0.35 1.0
566,755 + 12149 mRNA_3781 0.44 -0.1
567,303 - 12149 mRNA_3781 0.65 0.7
567,481 + 12149 mRNA_3781 0.71 1.1
567,772 + 12149 mRNA_3781 0.82 0.9
568,071 - 0.3
568,201 + 0.9
568,201 - 0.4
568,331 - -0.6
568,340 - 1.8
568,351 - 0.6
568,362 - -1.7
568,368 + 0.0
568,378 + 0.6
568,386 - 1.0
568,500 - -0.1