Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3728

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3727: 12095 - SMART-Leucine rich repeat, ribonuclease inhibitor type-SM00368,SUPERFAMILY--SSF52047, at 439950 to 441597 12095 mRNA_3728: 12096 - K11142 LAP3 cytosol aminopeptidase, at 441671 to 443858 12096 mRNA_3729: 12097 - K15280 SLC35C2 solute carrier family 35, member C2, at 444211 to 445530 12097

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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441,534 + 0.2
441,537 - 0.4
442,147 + 12096 mRNA_3728 0.22 0.7
443,149 - 12096 mRNA_3728 0.68 -0.1
443,150 - 12096 mRNA_3728 0.68 0.6
443,258 - 12096 mRNA_3728 0.73 0.8
443,310 - 12096 mRNA_3728 0.75 -1.8
443,441 + 12096 mRNA_3728 0.81 0.9
443,572 - 12096 mRNA_3728 0.87 -0.1
443,750 - 1.0
443,791 - -2.9
443,836 - 1.2
443,837 - -1.0
443,853 + 1.0
443,880 - 0.5
443,885 + -1.5
443,898 - -0.5
443,903 - 0.7
443,903 - 1.6
443,905 + 0.3
443,911 + 0.2
443,919 + 1.3
443,920 + 0.2
443,932 - 0.2
443,933 - -0.2
443,961 + -0.7
443,962 - 0.8
443,966 - 0.6
443,973 + 0.7
444,026 - -1.0
444,032 - 0.7
444,053 - 2.3
444,055 + 1.5
444,070 + -0.5
444,081 - 1.0
444,149 + 0.1
444,158 + 0.4
444,177 + -0.2
444,186 + 1.2
444,200 + 0.3
444,218 + 0.7
444,331 + 1.2
444,620 - 12097 mRNA_3729 0.31 -1.5
444,628 + 12097 mRNA_3729 0.32 0.5