Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3718

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3717: 12085 - K03979 obgE, cgtA GTPase, at 418976 to 421073 12085 mRNA_3718: 12086 - K00249 ACADM, acd acyl-CoA dehydrogenase, at 421354 to 423944 12086 mRNA_3719: 12087 - K04043 dnaK molecular chaperone DnaK, at 424597 to 426828 12087

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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421,136 - -1.0
421,137 + -1.1
421,279 - -0.2
421,284 + 0.0
421,289 - 0.1
421,297 - -0.5
421,312 + -0.2
421,312 + -1.1
421,452 - 0.6
421,460 - -0.1
421,481 - -0.3
421,482 - 1.8
421,487 + -0.2
421,752 + 12086 mRNA_3718 0.15 1.0
421,817 + 12086 mRNA_3718 0.18 -0.0
422,221 - 12086 mRNA_3718 0.33 0.3
422,959 - 12086 mRNA_3718 0.62 -0.9
422,965 + 12086 mRNA_3718 0.62 -1.4
422,966 - 12086 mRNA_3718 0.62 1.3
422,976 + 12086 mRNA_3718 0.63 0.1
423,842 - 0.6
423,856 - 0.6
424,142 + 0.1
424,291 - 0.2