Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3708

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3707: 12075 - KOG2846 Predicted membrane protein, at 403479 to 405078 12075 mRNA_3708: 12076 - Hypothetical Protein, at 405406 to 406282 12076 mRNA_3709: 12077 - SUPERFAMILY--SSF52540, at 406586 to 407790 12077

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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405,145 + 2.1
405,150 - 0.4
405,159 + -0.2
405,179 + 0.4
405,290 - 3.0
405,296 - -0.1
405,322 - 0.2
405,519 + 12076 mRNA_3708 0.13 1.4
405,721 + 12076 mRNA_3708 0.36 1.5
405,768 + 12076 mRNA_3708 0.41 0.4
405,898 + 12076 mRNA_3708 0.56 0.4
405,907 - 12076 mRNA_3708 0.57 0.3
406,186 - 12076 mRNA_3708 0.89 -0.3
406,199 + 1.2
406,214 + -0.3
406,235 - 0.0
406,257 + 0.3
406,344 + -0.8
406,345 + 1.8
406,349 + 1.2
406,355 - -0.7
406,357 - -0.6
406,359 - -0.1
406,361 - 1.0
406,364 - -0.3
406,371 + 2.4
406,383 - -0.2
406,383 - -0.4
406,386 + 0.1
406,389 + -0.4
406,393 - 0.2
406,400 - 0.5
406,401 + -0.3
406,419 + 0.0
406,433 - -0.3
406,433 + 0.2
406,452 - -0.2
406,453 + 1.1
406,458 - -1.3
406,465 - -0.1
406,471 + -0.1
406,487 - 1.5
406,490 + 0.1
406,490 - -1.8
406,494 + 0.9
406,494 + 0.0
406,494 + -0.5
406,495 + 0.5
406,498 + -1.0
406,500 + 2.0
406,503 - 2.5
406,507 - -0.3
406,508 - -0.2
406,509 + -0.6
406,509 + 0.4
406,520 + -0.4
406,520 - -0.5
406,521 - 0.4
406,647 - -0.4
406,688 + 0.0
406,796 + 12077 mRNA_3709 0.17 0.7
406,803 + 12077 mRNA_3709 0.18 -0.3
406,921 + 12077 mRNA_3709 0.28 0.2
406,951 + 12077 mRNA_3709 0.30 1.8
407,087 - 12077 mRNA_3709 0.42 0.5
407,251 + 12077 mRNA_3709 0.55 2.0