Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3662

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3660: 12028 - HMMPfam-ATPase family associated with various cellular activities (AAA)-PF00004,SUPERFAMILY--SSF52540, at 285259 to 286189 12028 mRNA_3661: 12029 - Hypothetical Protein, at 286182 to 286643 12029 mRNA_3662: 12030 - KOG2768 Translation initiation factor 2, beta subunit (eIF-2beta), at 286767 to 288003 12030 mRNA_3663: 12031 - K01738 cysK cysteine synthase A, at 288181 to 289942 12031

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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285,805 + 12028 mRNA_3660 0.59 -0.2
286,475 - 12029 mRNA_3661 0.63 -0.1
286,530 + 12029 mRNA_3661 0.75 0.2
286,532 - 12029 mRNA_3661 0.76 -0.4
286,536 + 12029 mRNA_3661 0.77 1.4
286,541 + 12029 mRNA_3661 0.78 -0.3
286,545 - 12029 mRNA_3661 0.79 1.1
286,560 + 12029 mRNA_3661 0.82 0.4
286,591 - 12029 mRNA_3661 0.89 0.8
286,706 - 2.0
286,720 + 0.1
286,721 - -0.3
286,767 + -0.3
286,858 + -0.2
286,879 - 1.7
286,890 - -0.1
286,891 + 12030 mRNA_3662 0.10 0.7
286,922 - 12030 mRNA_3662 0.13 -1.2
286,972 - 12030 mRNA_3662 0.17 -0.1
286,982 + 12030 mRNA_3662 0.17 -0.1
287,010 + 12030 mRNA_3662 0.20 -0.5
287,063 - 12030 mRNA_3662 0.24 -0.5
287,063 + 12030 mRNA_3662 0.24 -0.5
287,070 + 12030 mRNA_3662 0.24 -0.3
287,079 - 12030 mRNA_3662 0.25 -0.7
287,085 - 12030 mRNA_3662 0.26 1.8
287,092 + 12030 mRNA_3662 0.26 -1.5
287,100 + 12030 mRNA_3662 0.27 0.2
287,107 - 12030 mRNA_3662 0.27 0.2
287,108 + 12030 mRNA_3662 0.28 0.3
287,211 + 12030 mRNA_3662 0.36 -2.0
287,221 - 12030 mRNA_3662 0.37 0.8
287,222 + 12030 mRNA_3662 0.37 0.4
287,231 - 12030 mRNA_3662 0.38 -0.3
287,237 - 12030 mRNA_3662 0.38 -0.5
287,239 + 12030 mRNA_3662 0.38 0.8
287,246 + 12030 mRNA_3662 0.39 0.9
287,247 - 12030 mRNA_3662 0.39 0.8
287,248 + 12030 mRNA_3662 0.39 -1.1
287,248 - 12030 mRNA_3662 0.39 0.8
287,254 + 12030 mRNA_3662 0.39 -1.1
287,272 + 12030 mRNA_3662 0.41 0.1
287,308 - 12030 mRNA_3662 0.44 -0.2
287,334 + 12030 mRNA_3662 0.46 0.2
287,346 + 12030 mRNA_3662 0.47 1.4
287,389 + 12030 mRNA_3662 0.50 0.4
287,403 - 12030 mRNA_3662 0.51 1.2
287,408 + 12030 mRNA_3662 0.52 0.5
287,410 + 12030 mRNA_3662 0.52 -0.2
287,412 - 12030 mRNA_3662 0.52 2.3
287,419 + 12030 mRNA_3662 0.53 -0.3
287,421 + 12030 mRNA_3662 0.53 -0.4
287,429 - 12030 mRNA_3662 0.54 0.7
287,431 - 12030 mRNA_3662 0.54 1.2
287,433 - 12030 mRNA_3662 0.54 2.1
287,446 - 12030 mRNA_3662 0.55 0.1
287,478 + 12030 mRNA_3662 0.57 0.7
287,507 - 12030 mRNA_3662 0.60 1.5
287,543 - 12030 mRNA_3662 0.63 -0.5
287,546 + 12030 mRNA_3662 0.63 -2.4
287,579 - 12030 mRNA_3662 0.66 1.4
287,684 - 12030 mRNA_3662 0.74 -0.8
287,687 + 12030 mRNA_3662 0.74 0.5
287,706 - 12030 mRNA_3662 0.76 1.2
287,712 - 12030 mRNA_3662 0.76 -0.0
287,723 - 12030 mRNA_3662 0.77 0.4
287,731 - 12030 mRNA_3662 0.78 0.5
287,732 - 12030 mRNA_3662 0.78 0.2
287,738 - 12030 mRNA_3662 0.78 -0.2
287,760 - 12030 mRNA_3662 0.80 -0.2
287,779 - 12030 mRNA_3662 0.82 -0.9
287,803 - 12030 mRNA_3662 0.84 -1.2
288,237 - -1.7
288,491 - 12031 mRNA_3663 0.18 1.4
288,966 - 12031 mRNA_3663 0.45 -2.0
288,976 + 12031 mRNA_3663 0.45 0.7