Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3606

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3605: 11973 - K01872 AARS, alaS alanyl-tRNA synthetase, at 154792 to 158003 11973 mRNA_3606: 11974 - HMMPfam-Tho complex subunit 7-PF05615, at 158142 to 159312 11974 mRNA_3607: 11975 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 159428 to 160353 11975

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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158,041 - 1.5
158,141 + -1.7
158,176 - 0.4
158,573 - 11974 mRNA_3606 0.37 0.6
158,579 - 11974 mRNA_3606 0.37 -0.1
158,919 - 11974 mRNA_3606 0.66 2.6
159,068 - 11974 mRNA_3606 0.79 -0.4
159,341 - -0.1
159,349 - -0.7
159,350 + 1.7
159,385 + -0.2
159,619 - 11975 mRNA_3607 0.21 0.4
159,638 - 11975 mRNA_3607 0.23 0.2
159,660 - 11975 mRNA_3607 0.25 -0.9
159,663 - 11975 mRNA_3607 0.25 -0.7
159,930 - 11975 mRNA_3607 0.54 -0.5
159,960 + 11975 mRNA_3607 0.57 0.3
160,202 + 11975 mRNA_3607 0.84 -1.0
160,222 + 11975 mRNA_3607 0.86 -1.7