Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3602

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3601: 11969 - K11367 CHD1 chromodomain-helicase-DNA-binding protein 1, at 143237 to 148837 11969 mRNA_3602: 11970 - K10839 RAD23, HR23 UV excision repair protein RAD23, at 149343 to 150921 11970 mRNA_3603: 11971 - K13628 iscA, ISCA1 iron-sulfur cluster assembly protein, at 151130 to 151909 11971

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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148,704 - 1.0
148,707 + 1.0
148,850 - 0.1
148,854 - 0.3
148,986 + -0.0
149,011 - 0.8
149,019 + 0.2
149,105 + -0.0
149,127 - 0.7
149,275 + 0.1
149,289 - 0.4
149,297 - -0.2
149,609 - 11970 mRNA_3602 0.17 0.7
149,910 + 11970 mRNA_3602 0.36 0.8
150,227 + 11970 mRNA_3602 0.56 1.9
150,472 + 11970 mRNA_3602 0.72 0.3
150,621 - 11970 mRNA_3602 0.81 0.4
150,738 + 11970 mRNA_3602 0.88 0.1
150,759 + 11970 mRNA_3602 0.90 0.3
150,900 - 0.3
150,928 - 0.6
150,937 - -0.7
150,938 + 0.3
150,942 + 1.1
151,050 + -1.6
151,052 + -1.3
151,058 + 1.6
151,083 - -0.7
151,094 + 1.3
151,110 + 0.8
151,111 - -0.1
151,118 + 0.5
151,118 - 1.0