Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3580

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3580: 11948 - KOG0715 Molecular chaperone (DnaJ superfamily), at 97177 to 97844 11948 mRNA_3581: 11949 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 97924 to 100153 11949

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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96,657 + -2.0
96,941 - -0.3
97,069 - 0.2
97,201 - 0.7
97,372 + 11948 mRNA_3580 0.29 1.0
97,627 - 11948 mRNA_3580 0.67 0.0
97,802 - 0.4
97,809 + 0.4
97,821 - 0.3
97,822 + 0.5
97,854 - 1.2
97,854 + -0.0
97,855 - 0.2
97,858 + -1.5
97,858 - 0.7
97,860 - 1.3
97,863 + 0.3
97,877 + 0.6
97,877 + 2.8
97,881 + -0.0
97,989 - 2.7
98,009 - -1.2
98,065 + -0.3
98,068 - -0.1
98,306 - 11949 mRNA_3581 0.17 0.7
98,334 - 11949 mRNA_3581 0.18 -0.5
98,338 - 11949 mRNA_3581 0.19 1.0
98,343 - 11949 mRNA_3581 0.19 -0.4
98,344 - 11949 mRNA_3581 0.19 -1.4
98,344 + 11949 mRNA_3581 0.19 1.0
98,355 + 11949 mRNA_3581 0.19 -0.1
98,358 + 11949 mRNA_3581 0.19 2.7
98,378 + 11949 mRNA_3581 0.20 1.7
98,501 - 11949 mRNA_3581 0.26 -2.7
98,514 + 11949 mRNA_3581 0.26 0.8
98,604 + 11949 mRNA_3581 0.30 0.1
98,793 - 11949 mRNA_3581 0.39 0.4