Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3554

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3553: 11921 - Hypothetical Protein, at 34390 to 35973 11921 mRNA_3554: 11922 - KOG0254 Predicted transporter (major facilitator superfamily), at 36108 to 36965 11922 mRNA_3555: 11923 - Hypothetical Protein, at 37536 to 38312 11923

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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35,203 - 11921 mRNA_3553 0.51 -0.4
35,655 + 11921 mRNA_3553 0.80 0.4
35,754 - 11921 mRNA_3553 0.86 0.5
35,766 + 11921 mRNA_3553 0.87 0.2
36,292 - 11922 mRNA_3554 0.21 0.2
36,474 + 11922 mRNA_3554 0.43 -0.7
36,656 + 11922 mRNA_3554 0.64 0.9
36,808 + 11922 mRNA_3554 0.82 0.1
36,824 + 11922 mRNA_3554 0.83 3.0
36,913 + 0.1
37,189 - -0.5
37,505 + 0.3
37,550 - 0.1
37,558 - 0.8
37,568 - -0.6
37,569 + -0.4
37,571 + 0.9
37,609 + -0.6
37,610 - 0.7
37,630 - 11923 mRNA_3555 0.12 0.1
37,630 + 11923 mRNA_3555 0.12 -0.4
37,632 + 11923 mRNA_3555 0.12 -0.1
37,636 + 11923 mRNA_3555 0.13 -0.3
37,646 + 11923 mRNA_3555 0.14 1.8
37,650 - 11923 mRNA_3555 0.15 0.4
37,684 - 11923 mRNA_3555 0.19 1.3
37,746 + 11923 mRNA_3555 0.27 0.3
37,753 + 11923 mRNA_3555 0.28 2.1
37,760 + 11923 mRNA_3555 0.29 0.2
37,763 + 11923 mRNA_3555 0.29 0.7
37,812 - 11923 mRNA_3555 0.36 4.2
37,822 - 11923 mRNA_3555 0.37 -1.7
37,833 + 11923 mRNA_3555 0.38 -0.3
37,833 - 11923 mRNA_3555 0.38 -0.9
37,835 + 11923 mRNA_3555 0.38 0.6
37,844 - 11923 mRNA_3555 0.40 1.9
37,848 - 11923 mRNA_3555 0.40 0.7
37,861 + 11923 mRNA_3555 0.42 0.4
37,865 - 11923 mRNA_3555 0.42 -0.2
37,867 + 11923 mRNA_3555 0.43 1.5
37,870 + 11923 mRNA_3555 0.43 1.5
37,871 + 11923 mRNA_3555 0.43 -0.6
37,877 + 11923 mRNA_3555 0.44 -0.0
37,885 - 11923 mRNA_3555 0.45 2.1
37,920 + 11923 mRNA_3555 0.49 0.0
37,920 + 11923 mRNA_3555 0.49 -1.2
37,924 + 11923 mRNA_3555 0.50 0.7
37,931 + 11923 mRNA_3555 0.51 -0.4