Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3540

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3539: 11907 - K12663 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, at 4641 to 6092 11907 mRNA_3540: 11908 - K00784 rnz ribonuclease Z, at 6477 to 8169 11908 mRNA_3541: 11909 - K01754 E4.3.1.19, ilvA, tdcB threonine dehydratase, at 8355 to 10759 11909

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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5,498 + 11907 mRNA_3539 0.59 0.2
5,519 - 11907 mRNA_3539 0.60 0.3
5,520 - 11907 mRNA_3539 0.61 1.6
5,535 - 11907 mRNA_3539 0.62 1.0
5,538 - 11907 mRNA_3539 0.62 1.0
5,575 + 11907 mRNA_3539 0.64 -0.2
5,695 - 11907 mRNA_3539 0.73 -0.6
5,764 - 11907 mRNA_3539 0.77 0.0
5,808 - 11907 mRNA_3539 0.80 -1.1
5,822 - 11907 mRNA_3539 0.81 1.4
5,827 - 11907 mRNA_3539 0.82 0.9
5,838 - 11907 mRNA_3539 0.82 -1.4
5,842 - 11907 mRNA_3539 0.83 0.7
5,932 - 11907 mRNA_3539 0.89 1.7
6,014 - -0.5
6,067 + -0.3
6,073 - -0.7
6,257 - 0.1
6,357 + -0.0
6,367 + 0.9
6,383 - 0.6
6,398 - -0.5
6,401 - 1.6
6,413 - -0.2
6,459 + 0.7
6,555 - 2.4
6,699 + 11908 mRNA_3540 0.13 0.2
6,850 - 11908 mRNA_3540 0.22 -0.3
6,886 + 11908 mRNA_3540 0.24 -0.3
7,439 + 11908 mRNA_3540 0.57 -0.3
7,439 + 11908 mRNA_3540 0.57 -0.4
7,441 - 11908 mRNA_3540 0.57 -1.4
7,682 - 11908 mRNA_3540 0.71 0.8
7,740 - 11908 mRNA_3540 0.75 0.6
7,778 + 11908 mRNA_3540 0.77 0.9
7,983 + 11908 mRNA_3540 0.89 -0.3
8,056 + -0.7
8,120 + 0.3
8,123 - 0.8
8,179 - 0.5
8,311 - -0.4
8,312 + 0.5
8,313 - 1.4
8,336 + 3.2
8,340 + -0.8