Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3494

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3493: 11861 - K06944 K06944 uncharacterized protein, at 234580 to 236697 11861 mRNA_3494: 11862 - SUPERFAMILY--SSF160104, at 237336 to 238428 11862 mRNA_3495: 11863 - KOG4118 Uncharacterized conserved protein, at 238693 to 239237 11863 mRNA_3496: 11864 - KOG1198 Zinc-binding oxidoreductase, at 239425 to 240814 11864

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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237,145 - 0.5
237,154 + -1.7
237,155 - 0.1
237,160 - 1.0
237,163 + -0.1
237,163 - -0.3
237,168 - -0.1
237,168 + -1.2
237,173 - 0.5
237,174 + -0.5
237,179 - 0.3
237,180 + -0.6
237,182 + 1.0
237,214 + -0.1
237,372 + 0.2
237,474 - 11862 mRNA_3494 0.13 0.5
237,794 + 11862 mRNA_3494 0.42 0.8
237,812 + 11862 mRNA_3494 0.44 0.2
237,836 + 11862 mRNA_3494 0.46 0.5
238,208 - 11862 mRNA_3494 0.80 0.6
238,216 - 11862 mRNA_3494 0.81 -1.1
238,376 + -0.4
238,382 + -0.5
238,654 + -0.7
238,677 - 2.0
238,687 - 0.4