Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3468

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3467: 11835 - KOG4503 Uncharacterized conserved membrane protein, at 173556 to 174836 11835 mRNA_3468: 11836 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 175378 to 177362 11836 mRNA_3469: 11837 - K07512 MECR, NRBF1 mitochondrial trans-2-enoyl-CoA reductase, at 177477 to 179110 11837

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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175,070 + 2.9
175,257 + -0.1
175,386 + -0.2
175,400 - -0.1
175,432 + -0.7
175,567 - -1.1
175,714 + 11836 mRNA_3468 0.17 0.8
175,719 - 11836 mRNA_3468 0.17 0.4
175,863 + 11836 mRNA_3468 0.24 -0.9
176,040 + 11836 mRNA_3468 0.33 1.3
176,071 + 11836 mRNA_3468 0.35 0.9
176,101 - 11836 mRNA_3468 0.36 1.6
176,293 + 11836 mRNA_3468 0.46 0.2
176,398 + 11836 mRNA_3468 0.51 0.6
176,525 + 11836 mRNA_3468 0.58 -1.1
176,533 - 11836 mRNA_3468 0.58 1.7
176,541 + 11836 mRNA_3468 0.59 1.0
176,592 - 11836 mRNA_3468 0.61 0.1
176,629 + 11836 mRNA_3468 0.63 -0.3
177,041 - 11836 mRNA_3468 0.84 0.5
177,292 - 0.8
177,436 - -0.2
177,447 + 0.1
177,483 + -0.4
177,494 - 0.5
177,585 - 0.5
177,590 - -1.7
177,653 + 11837 mRNA_3469 0.11 1.7
177,809 - 11837 mRNA_3469 0.20 -1.1
177,908 + 11837 mRNA_3469 0.26 1.2
177,910 - 11837 mRNA_3469 0.26 -0.5
178,026 - 11837 mRNA_3469 0.34 0.5
178,115 + 11837 mRNA_3469 0.39 0.2
178,347 - 11837 mRNA_3469 0.53 -0.4