Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3465

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3464: 11832 - K02684 PRI1 DNA primase small subunit, at 164658 to 166622 11832 mRNA_3465: 11833 - KOG1176 Acyl-CoA synthetase, at 166819 to 169091 11833 mRNA_3466: 11834 - HMMPfam-Sds3-like-PF08598, at 169311 to 170947 11834

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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166,680 + 2.5
166,777 - 0.4
166,965 - 0.3
167,758 + 11833 mRNA_3465 0.41 2.2
167,985 + 11833 mRNA_3465 0.51 -0.3
167,985 + 11833 mRNA_3465 0.51 0.8
168,105 + 11833 mRNA_3465 0.57 1.1
168,413 + 11833 mRNA_3465 0.70 0.3
168,547 + 11833 mRNA_3465 0.76 1.5
168,683 - 11833 mRNA_3465 0.82 1.2
168,725 + 11833 mRNA_3465 0.84 -0.4
168,853 + 11833 mRNA_3465 0.89 -0.4
168,861 - 11833 mRNA_3465 0.90 -0.1
168,997 - 0.8
169,000 + 0.9
169,011 - -0.0
169,033 + 0.6
169,039 - 1.2
169,146 - 0.7
169,149 - -0.0
169,153 - -0.7
169,163 + -0.5
169,174 - 2.1
169,179 + 0.5
169,179 + -0.4
169,202 + 1.4
169,208 + 2.2
169,216 - -0.1
169,218 + 0.4
169,253 + -0.6
169,506 - 11834 mRNA_3466 0.12 -0.3
169,543 + 11834 mRNA_3466 0.14 1.0
169,787 + 11834 mRNA_3466 0.29 0.6
169,811 - 11834 mRNA_3466 0.31 -0.1
169,940 - 11834 mRNA_3466 0.38 -2.4
170,028 - 11834 mRNA_3466 0.44 0.1